Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19650 550 / 0 Mitochondrial transcription termination factor family protein (.1) AT5G45113 379 / 9e-127 mitochondrial transcription termination factor-related / mTERF-related (.1) AT5G06810 351 / 2e-108 Mitochondrial transcription termination factor family protein (.1) AT3G60400 187 / 7e-52 Mitochondrial transcription termination factor family protein (.1) AT1G74120 52 / 5e-07 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048300 [exp] 452 / 2e-153 AT5G06810 485 / 2e-159 Mitochondrial transcription termination factor family protein (.1) Potri.016G048200 [exp] 445 / 2e-150 AT5G06810 501 / 3e-165 Mitochondrial transcription termination factor family protein (.1) Potri.016G048400 [exp] 419 / 3e-140 AT5G06810 483 / 9e-159 Mitochondrial transcription termination factor family protein (.1) Potri.014G044900 [exp] 179 / 5e-49 AT3G60400 598 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.018G051600 [exp] 52 / 7e-07 AT1G74120 501 / 2e-176 Mitochondrial transcription termination factor family protein (.1) Potri.015G115701 [exp] 0 / 1 AT4G19650 139 / 2e-39 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038336 [exp] 503 / 3e-173 AT4G19650 475 / 2e-162 Mitochondrial transcription termination factor family protein (.1) Lus10012021 [exp] 351 / 1e-113 AT5G06810 437 / 5e-141 Mitochondrial transcription termination factor family protein (.1) Lus10039774 [exp] 325 / 3e-104 AT5G06810 398 / 5e-127 Mitochondrial transcription termination factor family protein (.1) Lus10018548 [exp] 205 / 2e-59 AT5G06810 271 / 5e-81 Mitochondrial transcription termination factor family protein (.1) Lus10013142 [exp] 164 / 2e-43 AT3G60400 559 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10029199 [exp] 42 / 0.0008 AT5G64950 226 / 1e-70 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.012G118200.2 pacid=42783521 polypeptide=Potri.012G118200.2.p locus=Potri.012G118200 ID=Potri.012G118200.2.v4.1 annot-version=v4.1 ATGATATTGACTATAATCAATAAAAGGGTGTCTAAGTTCTCTGAAATGATAGCTCAAGTCAATAAATCTCTTGTTTTCTCTCCTGTTGATATTGAAATTT CCTATAAAAAGCAAAACCCTTTTCTCAGTTCCCTTAAAGTTCAATGCTTTTGCAGTTCCAGATCGTCCCAGAATGCAAAAGTTTCACATTCTGGGTCAGT TCAATCACTTGTTACTCTTCATAGTACTCGTGTCTCACGGGTTGCGAGAACTGATGCTCAACGTGTTCTCTTTGATTACTTGCATTGCACTAGGAACTTT GATTTCAATGATGCAGAGCATATTAGCAAGAATTCACCTCATTTTATTGAAAATTTGCTCACCAAGATTGATAATGATAAAGACGTTGTGCGGTTGTTGA ATAAATTTCTTAGGTATAATCCAATTAATGAGTTTGAGCCGTTCTTTGAGAGTTTAGGTTTGAGGCCATCTGAGGTTCCTTCGGTTCTTCCACCGCATTT GATGTATCTTGGTGATAATGATATGTTGCTTGAGAACTTTCATGTTTTGTGTAATTATGGAATTCCCCGTAGTAAGATTGGTAGGATGTACAAGGAAGCA ATAGAGATTTTCGGATATAATTATGGGGTGTTGAAATTGAAACTTCTGGCTTATGAAAACTTGGGTCTAAGCAAAACCACTGTTGTTAAGCTTGTTAGTT GTTGCCCATCTCTCCTTATTGGTGGCGTTGATAGAGAGTTTGTTAATGTTCTTGGGAGATTAAATAGAGCAGGACTAAAGAATGATTTGATTGGAGGATA CTTGTCTGCTAAAGAGTCTTATGATTGGAAAAGACTGATCGACACAATATATTTTCTTGACAAAGTAGGTTATAGTGAGGAGCAATTCCGTGATCTGTTG AAAACGAATCCTGTGTTAGTGTTTGAAGGTTCTGGGAAGAAAGTTTATTTGTTGTTTGGTCGGTTACTCAAGTTGGGCCTCAAGGTGAATGAGATTTATT CATTGTTCACACAATATCCACAAATCTTGTCAGCCAAGCGTGCGAAGAATCTTTTGCGGGGAATTCATATCTTGTTGGGCATTGGAATGGGAGTAGAAGA CATTGCAAACATCATATCTACACAAATGGAACTTCTGTGCTCTGCTGCTTTAAAAGGACCTGTAACTCTTCGTAGACAATTCAAAGATAAGAAAGATAGT TTATGCCAAATCCTCATGGAAAACCCACTGGAGCTGTTCCATTTGGATTCTAAATCAGAAGTTGAAAGCAGCAAAATGTTATCCTCCCAGGGTCCTACTA ACAAATTGGAGAAAACAGCATTCTTGTTGAGATTGGGGTATGTTGAGAACTCAGATGAGATGGCAAGAGCTCTAAAAATGTTTCGAGGTAGAGGAGATCA ATTACAAGAGAGGTTTGATTGCCTGGTACAAGCTGGTTTGGACTACAATGTTGTCTCCAGCTTCATCAAACAAGCTCCCATGGTGCTAAACCAGACCAAA GATGTAATTGAAAAGAAGATTGATTGCCTGACAAACTTAGGCTGCTCGGTCAACTCACTGGTGGCATTCCCATCATATTTATGCTACGACATGGAGAGGA TTAATCTTAGATTTAGAATGTATACTTGGCTGAAGGAAAAAGGTGCAGCAAAACCCAAATTGTCCTTGAGCACTATCCTTGCATGTTCAGACGCACGATT CATAAAATATTTTGTAGATGTCCATCCTGAAGGACCAGCAATGTGGGAAAGTTTAAGGAACACGTCAGCTTCAAGCTAA
AA sequence Show only first row Show all	>Potri.012G118200.2 pacid=42783521 polypeptide=Potri.012G118200.2.p locus=Potri.012G118200 ID=Potri.012G118200.2.v4.1 annot-version=v4.1 MILTIINKRVSKFSEMIAQVNKSLVFSPVDIEISYKKQNPFLSSLKVQCFCSSRSSQNAKVSHSGSVQSLVTLHSTRVSRVARTDAQRVLFDYLHCTRNF DFNDAEHISKNSPHFIENLLTKIDNDKDVVRLLNKFLRYNPINEFEPFFESLGLRPSEVPSVLPPHLMYLGDNDMLLENFHVLCNYGIPRSKIGRMYKEA IEIFGYNYGVLKLKLLAYENLGLSKTTVVKLVSCCPSLLIGGVDREFVNVLGRLNRAGLKNDLIGGYLSAKESYDWKRLIDTIYFLDKVGYSEEQFRDLL KTNPVLVFEGSGKKVYLLFGRLLKLGLKVNEIYSLFTQYPQILSAKRAKNLLRGIHILLGIGMGVEDIANIISTQMELLCSAALKGPVTLRRQFKDKKDS LCQILMENPLELFHLDSKSEVESSKMLSSQGPTNKLEKTAFLLRLGYVENSDEMARALKMFRGRGDQLQERFDCLVQAGLDYNVVSSFIKQAPMVLNQTK DVIEKKIDCLTNLGCSVNSLVAFPSYLCYDMERINLRFRMYTWLKEKGAAKPKLSLSTILACSDARFIKYFVDVHPEGPAMWESLRNTSASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19650			Mitochondrial transcription te...		Potri.012G118200 [exp]	0	1
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.001G173500 [exp]	1.41	0.8937
AT5G40520			unknown protein		Potri.017G018300 [exp]	2.00	0.8826
AT4G23540			ARM repeat superfamily protein...		Potri.006G050000 [exp]	3.87	0.8820
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	4.89	0.8867
AT4G25630		ATFIB2, FIB2	fibrillarin 2 (.1)		Potri.012G144800 [exp]	6.63	0.8415
AT4G18375			RNA-binding KH domain-containi...		Potri.004G066100 [exp]	7.14	0.8298
AT2G33680			Tetratricopeptide repeat (TPR)...		Potri.013G006800 [exp]	7.93	0.8678
AT1G56350			Peptide chain release factor 2...		Potri.013G009200 [exp]	14.69	0.8240
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Potri.005G097500 [exp]	14.83	0.7506
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Potri.008G043400 [exp]	15.23	0.8578

Compare expression of checked genes

Potri.012G118200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.