Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45110 566 / 0 ATNPR3, NPR3 NPR1-like protein 3 (.1) AT4G19660 562 / 0 ATNPR4, NPR4 NPR1-like protein 4 (.1) AT4G26120 338 / 3e-110 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT1G64280 335 / 4e-109 SAI1, NIM1, NPR1, ATNPR1 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) AT2G41370 145 / 6e-38 BOP2 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT3G57130 144 / 9e-38 BOP1 BLADE ON PETIOLE 1, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118500 [exp] 965 / 0 AT5G45110 644 / 0.0 NPR1-like protein 3 (.1) Potri.015G117200 [exp] 874 / 0 AT5G45110 656 / 0.0 NPR1-like protein 3 (.1) Potri.002G056500 [exp] 615 / 0 AT5G45110 518 / 1e-178 NPR1-like protein 3 (.1) Potri.005G206100 [exp] 593 / 0 AT5G45110 531 / 0.0 NPR1-like protein 3 (.1) Potri.006G148100 [exp] 432 / 6e-147 AT1G64280 596 / 0.0 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Potri.015G116900 [exp] 293 / 2e-98 AT5G45110 169 / 3e-50 NPR1-like protein 3 (.1) Potri.015G113466 [exp] 168 / 1e-50 AT5G45110 99 / 1e-25 NPR1-like protein 3 (.1) Potri.006G043400 [exp] 152 / 9e-41 AT2G41370 671 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.016G040500 [exp] 137 / 2e-35 AT2G41370 639 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018289 [exp] 720 / 0 AT5G45110 650 / 0.0 NPR1-like protein 3 (.1) Lus10040620 [exp] 714 / 0 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1) Lus10038337 [exp] 597 / 0 AT5G45110 575 / 0.0 NPR1-like protein 3 (.1) Lus10036200 [exp] 484 / 2e-167 AT5G45110 489 / 6e-168 NPR1-like protein 3 (.1) Lus10018756 [exp] 409 / 2e-134 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10024842 [exp] 301 / 4e-98 AT4G26120 316 / 7e-103 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10035413 [exp] 136 / 9e-35 AT2G41370 699 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10031017 [exp] 135 / 2e-34 AT2G41370 701 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF11900 [poplar] [flax] DUF3420 Domain of unknown function (DUF3420) CL0465 [poplar] [flax] PF12313 [poplar] [flax] NPR1_like_C NPR1/NIM1 like defence protein C terminal
Representative CDS sequence Show only first row Show all	>Potri.012G118300.4 pacid=42783122 polypeptide=Potri.012G118300.4.p locus=Potri.012G118300 ID=Potri.012G118300.4.v4.1 annot-version=v4.1 TATTGCATGAGTGAATTGTTACCTTATGGAAATGTTGGATATGAAGCCTTCCTAATTTTCTTGAGCTATTTGTACACTGGAAAACTCAAGCCATCTCCAA TGGAAGTCTCAACATGTGTTGATAATGTATGCGCTCATGATGCGTGTAGACCTGCGATTACTTTTGCAGTGGAATTGACGTATGCATCATCCATATTTCA AGTTCCAGAGCTGGTTTCACTTTTCCAGAGACGCCTTCTTAACTTTGTTCGGAAAGCTCTTGCGGAGGATGTGATCCCAATCCTTGTGGTTGCCTTCCAT TGTCAATCAAGTCAGCTTATTGCACAATGTGTTGATAGAATAGCAGTGTCTAATCTTGACAACATATCTATAGAGAAAGAGCTTCCCCATGAAGTTGCAG ACAAAATTAAACAGCTCCGCCGCAAACCTATTTCTGAAGATGAGAACAACACAGAGGCTGGGGACCCCCTACGTGAAAAGAGAATCAAGAGGATACACAT GGCATTGGACTCAGATGATGTTGAACTTGTGAAACTTCTCCTGACTGAGTCTGATATATCCTTAGATGATGCTAACGCTCTCCATTATTGTGCGTCATAC TGTGATCTCAAGTTTATGTCTGAGGTGCTTAGCCTTGGTCTTGCTAATGTCAATCTTAGAAACTCGCGAGGTTACACAGTTCTTCACATTGCTGCAATGC GGAAAGAGCCATCAGTGATAGTTTCGTTGCTGGCCAAAGGAGCATCTGCTTTGGACTTGACATCAGATGGGCAAAGTGCTGTTAGTATCTGCCGGAGGTT GACAAGGCCAAAAGACTATCATGCTAAAACAGAGCAAGGGCAGGAAGCAAACAAAGACAGGTTATGCATCGATATTTTAGAGAGGGAAATGAGAAGGAAT CCACGGGGTGGGAGTGCTTCCATCACTTCCCATACAATGGTTGATGATCTGCACATGAAGCTGTTATACCTGGAGAACAGAGTGGCATTTGCACGATTAT TCTTCCCTACTGAAGCAAAGCTAGCAATGGACATTGCACATGCTGCAACAACATCAGAATTTGCTGGTCTTGCTGCATCAAAAGGTTCTAGCGGGAATTT GAGGGAGGTTGACCTGAATGAGACACCAATTATGCAGAACAAAAGACTTCGTTCTAGGATGGAAGCCCTAATGAAAACAGTGGAAATGGGCCGACGATAC TTCCCTAATTGCTCTGAAGTGCTTGATAAGTTCATGGAGGATGACCTCCCTGATTTGTTTTTCCTTGAAAAGGGCACCCCAGATGAACAAAGAATCAAGA GGACACGTTTCATGGAACTTAAAGAGGATGTTCAAAAGGCATTTAACAAGGACAAGGCTGTGATTAACCGCTCTGTTTTGTCTTCCTCGTCATCCTCATC TTCTCAAAAAGATGGTGTTGGTAACAAGCTCAGGAAACTATGA
AA sequence Show only first row Show all	>Potri.012G118300.4 pacid=42783122 polypeptide=Potri.012G118300.4.p locus=Potri.012G118300 ID=Potri.012G118300.4.v4.1 annot-version=v4.1 YCMSELLPYGNVGYEAFLIFLSYLYTGKLKPSPMEVSTCVDNVCAHDACRPAITFAVELTYASSIFQVPELVSLFQRRLLNFVRKALAEDVIPILVVAFH CQSSQLIAQCVDRIAVSNLDNISIEKELPHEVADKIKQLRRKPISEDENNTEAGDPLREKRIKRIHMALDSDDVELVKLLLTESDISLDDANALHYCASY CDLKFMSEVLSLGLANVNLRNSRGYTVLHIAAMRKEPSVIVSLLAKGASALDLTSDGQSAVSICRRLTRPKDYHAKTEQGQEANKDRLCIDILEREMRRN PRGGSASITSHTMVDDLHMKLLYLENRVAFARLFFPTEAKLAMDIAHAATTSEFAGLAASKGSSGNLREVDLNETPIMQNKRLRSRMEALMKTVEMGRRY FPNCSEVLDKFMEDDLPDLFFLEKGTPDEQRIKRTRFMELKEDVQKAFNKDKAVINRSVLSSSSSSSSQKDGVGNKLRKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.012G118300 [exp]	0	1
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.012G118500 [exp]	1.00	0.8716
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Potri.003G194000 [exp]	7.61	0.7622
AT5G40280		ATFTB, WIG, ERA...	WIGGUM, ENHANCED RESPONSE TO A...		Potri.017G073200 [exp]	9.53	0.6651
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.010G089500 [exp]	14.49	0.6646	LOX1.7
AT5G57580			Calmodulin-binding protein (.1...		Potri.018G095300 [exp]	15.19	0.7327
AT5G49960			unknown protein		Potri.013G128100 [exp]	21.79	0.7155
AT2G30140			UDP-Glycosyltransferase superf...		Potri.009G077500 [exp]	42.00	0.6961
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.008G020700 [exp]	43.81	0.6627
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.008G101300 [exp]	47.05	0.6859
					Potri.002G190700 [exp]	69.97	0.6502

Compare expression of checked genes

Potri.012G118300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.