Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117300 [exp] 1497 / 0 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G214100 [exp] 222 / 2e-59 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.001G012300 [exp] 214 / 3e-58 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.005G240100 [exp] 150 / 8e-37 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 145 / 3e-35 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G083600 [exp] 100 / 3e-21 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G220800 [exp] 56 / 1e-07 AT3G06880 1115 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036201 [exp] 785 / 0 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038340 [exp] 738 / 0 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013745 [exp] 224 / 3e-60 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10039197 [exp] 221 / 3e-59 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10013551 [exp] 160 / 1e-39 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 150 / 2e-36 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034937 [exp] 117 / 3e-26 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023666 [exp] 102 / 5e-22 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023667 [exp] 44 / 0.0006 AT2G28830 84 / 9e-17 PLANT U-BOX 12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G118600.1 pacid=42783392 polypeptide=Potri.012G118600.1.p locus=Potri.012G118600 ID=Potri.012G118600.1.v4.1 annot-version=v4.1 ATGGCTTCCTTACATCAAATGCTCTCCGAGGAAGGATTTGAGCACAGAAAGTTCTTGAGAAATAGAGACAGATTAACTAGACCAGAAGAGTCTGTAATAT TGCCAATACATATTTGCCATGACCAAAAGAGGTTCCAGTCTCCTAAGCAGAAGACCGATATGGGTTCCACGCGAAAAGGGTCGTCGATTTCGTCAAGGAG AGTGAGTTCGGATACGGAGAGGCTGCAGTCTAAGTCATTGTTGAAGGGAGAAGAACCTGCAATTGATGTAATAGCTATTAGAGCGGTGGTATCTATACTT AGTGGTTATATAGCCAGGTACATAAAAGATGTGAGTTTTAGGGAGGTGATTAGAGAGAAGTGCAACTCTTGCTTGGTGAGGAGAAGCAAGGGTTCGGATG ATGGTATTTTTGTGAATATGGAAGTGGGAATGGAAAGCATTGAGAAGTTGGTTGAAGAGAAAGGAACAAGGAAGGAAGTGAAGATGGAGTCGTTGAAAAA TTCAATTCAGCTTTTGAACATTGTTGCTTCTTTGAATTCTAAGAAATCAAGGAAGGGTTCAACTTGTGGTGTACCCAATTCACATCTCTCAGCTTGTGCT CAATTGTACTTGTCAATTGTTTACAAGCTAGAGAAGAATGACAGGATATCCGCTAGGCATCTACTTTATGTTTTTTGCGATTCGCCTTTTCTAGCAAGGA CTCACTTGCTTCCTGATCTTTGGGAGCATTTCCTTCTTCCCCATCTACTTCATCTTAAGGTTTGGTACCATGAGGAGCTTGAGGCTCTCTCGGACTCCCA GCATGTTGAGAAGGAAAGACGGATGAAAGCTTTGAGCAAGGTCTATAATGACCACATGGATATGGGAACCATCCAGTTTGCTCTGTACTATAACGAGTGG CTCAAGGTTGGGGCTAAAGCTCCTTCTGTTCCTGCTGTCCCTTTGCCATCTAGACCAAGTTATGCAACATCAATGAGGAAATCATCAGATTCTTATAAAT CGCGTTCCTCCATCAACACAAACTTCAGATACCGAGCTGTGTTTGGCCCCACGCTAGAGCGGCAATCGAAGGACTTCGATTCTCGAAATAGAGCTTCAAT GGATACATGGAGCATAGAGGAAGATAAAGTGTGCATAGATGAATACAAAGACTGCAGTTATGCTACTAATAATAAGACGAGGACTACTCGAAGGCCATCA AGTAAAAATTATGTTATTTCGAATCATGATATATGGCATGAGCCGCTGAAATCAGAACTCTTTAGGCTTTTTTCATGTCGAAGTGTGTCATCAGAATGCC TAGGGAATGGCAACATCATAGTCAGGAGTAATTCAATCAGGAATGAAGCGACAACCCACCTTCCTCCTATTGATCTAAGTAGAGCCATTAGCACTATTTG CTCCTCAGATAGTCTGACTGAGTGTGAAACTGCAATCCGTGTCACTGCCAAAGCCTGGTTGGACTCCATTGGCAGTAATGTAATTGAAGGTGCTTTATCC AAAGCACCTGTGATTGAAGGATTGCTTGAGGTCTTGTTTGCTTCTACTGATGACAAAGTTCTAGAGCTGGCGATATCTATTCTCGCAGAGCTCGTAGTAA GAAATGAAGCAAACAGGTTAATAGTACTGAACTCTGATCCACAGCTCGAGATCTTCATGAAACTCTTAAAAAGTAACAGTTTGTTTCTTAAAGTTGCGGT TCTGCTTTACCTATTGAAGCCGAAGGCAAAACAGATGATATCTATAGAGTGGGTAGCACTAGTCCTACGAGTTTTAGAGTTTGGAGGCCAGTTGCAGACC CTATTCACCGTACGGTGCATGCCTGAAAAGGCAGCAATGTACTTCTTAGGCCAACTTCTAACAGGTTTTGATGAAGATAGGAACTTAGAGAATGCTAGTC AAGTTGTTGCCCTGGGAGGATTGAGCTTCTTGGTAAGGACCTTTGAAGTAGGAGACATTATTGAGAGAAATCATGCTGCTACACTCATGTCATGTTGCAT TCGAGCTAATGGGAGCTCTCGGAACTACCTAGCTGAGAATTTGAACAAGGATTCTCTCCTTCAGCTCATTGTTCTCGGAATTCAGAAGAAATTTAAAGGA TGTGTGTTCACTTTACTAGCCGATCTACTGTGCCTGAGTAGACGAACGTGGATCATCAAATTCTTAACTGGACTCGGTAATGGATGGGGTGGCTTGAACA CCATGCACATCTTTCTAGTCTATCTCCAGAGAGCTTCACCTGAAGAACGTCCGCTGGTTGCAGCAGTTCTCTTACAGCTTGATCTTATGGGAGATCTTTC GCAGTCCAATTTATATAGGGAAGAAGCGGTTGAGGCAATCACAGAATCTTTAGAGTGTCATAATTGTAGCACCAAGGTTCAAGAACAATCGGCGAAAGCT CTCTTGATGTTGGGAGGCTGTTTTTCATACTCTGGAGAGGCATCAGCAGAAGAATGGCTTTTACGACAAGCAGGTTTCCACGAGAGATTACGGGGATCAT TTCAACGCAAGGAGATAGTTGATGGGAACTTGAATGAAGAGGAAGATCCAATGGAAGATTGGCAAAGGAAAGTAGCAGTAGTTTTGCTCAACAGTGGCGG AAAGAGGTTTTTGTCTGCCCTTTCCAATTCCATTGCCAATGGCATCCCGATTTTAGTACAATCAAGCCTCTTCACTGTTGCATGGATGAGAAGAATCTTG CTTCCAGTCAGAAATGAAAATTCATACTCAACAACAACACCGCAGCTAACAGAATCACCACATTATGACAGAGCTCTTAATGGAAGAATGAATCCATCTT TTTCACAGCAGCATCTCATAAAAAATTCAGAATCTCTCTCTATGCTTTCAACATTGAATAAAGAGTTGATAGATCCTCTTCGAAATCCTTTATGA
AA sequence Show only first row Show all	>Potri.012G118600.1 pacid=42783392 polypeptide=Potri.012G118600.1.p locus=Potri.012G118600 ID=Potri.012G118600.1.v4.1 annot-version=v4.1 MASLHQMLSEEGFEHRKFLRNRDRLTRPEESVILPIHICHDQKRFQSPKQKTDMGSTRKGSSISSRRVSSDTERLQSKSLLKGEEPAIDVIAIRAVVSIL SGYIARYIKDVSFREVIREKCNSCLVRRSKGSDDGIFVNMEVGMESIEKLVEEKGTRKEVKMESLKNSIQLLNIVASLNSKKSRKGSTCGVPNSHLSACA QLYLSIVYKLEKNDRISARHLLYVFCDSPFLARTHLLPDLWEHFLLPHLLHLKVWYHEELEALSDSQHVEKERRMKALSKVYNDHMDMGTIQFALYYNEW LKVGAKAPSVPAVPLPSRPSYATSMRKSSDSYKSRSSINTNFRYRAVFGPTLERQSKDFDSRNRASMDTWSIEEDKVCIDEYKDCSYATNNKTRTTRRPS SKNYVISNHDIWHEPLKSELFRLFSCRSVSSECLGNGNIIVRSNSIRNEATTHLPPIDLSRAISTICSSDSLTECETAIRVTAKAWLDSIGSNVIEGALS KAPVIEGLLEVLFASTDDKVLELAISILAELVVRNEANRLIVLNSDPQLEIFMKLLKSNSLFLKVAVLLYLLKPKAKQMISIEWVALVLRVLEFGGQLQT LFTVRCMPEKAAMYFLGQLLTGFDEDRNLENASQVVALGGLSFLVRTFEVGDIIERNHAATLMSCCIRANGSSRNYLAENLNKDSLLQLIVLGIQKKFKG CVFTLLADLLCLSRRTWIIKFLTGLGNGWGGLNTMHIFLVYLQRASPEERPLVAAVLLQLDLMGDLSQSNLYREEAVEAITESLECHNCSTKVQEQSAKA LLMLGGCFSYSGEASAEEWLLRQAGFHERLRGSFQRKEIVDGNLNEEEDPMEDWQRKVAVVLLNSGGKRFLSALSNSIANGIPILVQSSLFTVAWMRRIL LPVRNENSYSTTTPQLTESPHYDRALNGRMNPSFSQQHLIKNSESLSMLSTLNKELIDPLRNPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06880			Transducin/WD40 repeat-like su...		Potri.012G118600 [exp]	0	1
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072300 [exp]	3.87	0.8902
AT1G03670			ankyrin repeat family protein ...		Potri.018G077250 [exp]	4.24	0.8920
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G192000 [exp]	5.65	0.8906
AT5G41130			Esterase/lipase/thioesterase f...		Potri.001G324400 [exp]	6.16	0.8556
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	6.48	0.8928
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.004G034800 [exp]	7.21	0.8523
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.002G068400 [exp]	7.34	0.8935
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128700 [exp]	9.79	0.8533
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.012G104900 [exp]	11.22	0.8748
AT5G36930			Disease resistance protein (TI...		Potri.001G066500 [exp]	11.22	0.8654

Compare expression of checked genes

Potri.012G118600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.