Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31280 911 / 0 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 842 / 0 AGO3 ARGONAUTE 3 (.1) AT1G69440 536 / 1e-176 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G48410 479 / 3e-154 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT2G27880 463 / 1e-148 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT5G43810 456 / 7e-146 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT5G21150 360 / 1e-110 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G32940 344 / 1e-104 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT2G27040 341 / 3e-103 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT5G21030 279 / 4e-81 PAZ domain-containing protein / piwi domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117401 [exp] 682 / 0 AT1G31280 405 / 5e-130 argonaute 2, Argonaute family protein (.1) Potri.015G117350 [exp] 634 / 0 AT1G31280 466 / 2e-156 argonaute 2, Argonaute family protein (.1) Potri.010G163800 [exp] 578 / 0 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.006G118600 [exp] 464 / 1e-149 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.010G081300 [exp] 462 / 4e-148 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.012G037100 [exp] 460 / 1e-146 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.008G158800 [exp] 458 / 1e-146 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.009G001500 [exp] 452 / 2e-144 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.015G029000 [exp] 452 / 1e-143 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040619 [exp] 1147 / 0 AT1G31280 923 / 0.0 argonaute 2, Argonaute family protein (.1) Lus10018290 [exp] 1137 / 0 AT1G31280 907 / 0.0 argonaute 2, Argonaute family protein (.1) Lus10037136 [exp] 583 / 0 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036794 [exp] 577 / 0 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 575 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10017983 [exp] 469 / 1e-148 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 454 / 3e-146 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10041978 [exp] 460 / 2e-145 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031331 [exp] 457 / 3e-145 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10006627 [exp] 450 / 2e-143 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [poplar] [flax] PAZ PF02170 [poplar] [flax] PAZ PAZ domain CL0219 [poplar] [flax] RNase_H PF02171 [poplar] [flax] Piwi Piwi domain CL0219 [poplar] [flax] PF08699 [poplar] [flax] ArgoL1 Argonaute linker 1 domain CL0219 [poplar] [flax] PF16486 [poplar] [flax] ArgoN N-terminal domain of argonaute
Representative CDS sequence Show only first row Show all	>Potri.012G118700.3 pacid=42783172 polypeptide=Potri.012G118700.3.p locus=Potri.012G118700 ID=Potri.012G118700.3.v4.1 annot-version=v4.1 ATGCCAAAAGGTTTGGCTTCTTCCTCTTCGGACAATGCTAATAGGGTTAGTCCGGTTCAACGACCAGATACAGGTGGCAAACTGGCGGTCCGAACCCCTA GGCTTCTTGTTAATCACTTTCCTGTTAAGTTCAGTCCTAAGAGTATCATAAGGCATTACGATGTTGATATCAAACAAGAAGTGCCTCCCAAGCATGGTCG GCCTGGGAAAATTTCAAAGTCCATTTTAACAATGATCAGGGATAAGTTATTTACTGATGATCCCTCACGGTTTCCTTTAGGTAAGACAGCCTATGATAGG GAGAAGAATATTTTCAGTGCAGTTCCCTTGCCCACAGGAACATTTAGAGTGGAGGTCTCTGAGGCAGAAGATGCGAAACCACGTTCTTACCTGTTTACCA TAAAGCTTGTGAATGAACTTCAGCTGCGCAAGCTGAAGGATTACTTGGATGGGACACTTCGTTCAGTACCTCGTGACATATTGCAAGGGATGGATGTGGT GGTGAAAGAGCACCCAGCTAGGACGATGATCTCTGTTGGTCGTGGCTTCCATTCTGTTAGAGCTCACCAAGATTACCTTGGGTATGGAATCATAGCATCT AAAGGTTGTCAACATAGCCTCAAGCCGACCTCCCAGGGCCTAGCTTTATGCTTGGATTATTCTGTTCTGTCATTTCATGAGCCAGTTTCTGTGATAGATT TCTTGACAAAACATATTTGTGGGTTTAATTTAAATAATTTTAGAAGATGTAGGGGAGATGTGGAAATTGCATTGAAAGGACTCAAAGTTAGAGTGACTCA CCGTGTCACCAAACAAAAATATGTTATTGTTGGGTTGACGAGAGATGACACACGAGATATTACATTTTCTCAAGAAGATCCAGATGGCAAGGCTTCACAG AATGTTAGGCTTGTTGATTATTTCAGGCAAAAATATGGCAGGGATATAGTGCATCAAGATATCCCTTGCCTAGAAATGAAAAGCAACATGAGAAACTATG TACCGATGGAGTACTGTGTCTTGGTTGAAGGGCAAGTATTTCCAAAAGAGCATCTGCAGAGAGACGAAGCCCAGATGTTGAAGGACATCTCACTAGCCAA GGCCAAGGATAGACAGAAAACAATATGCAGTATGGTACGAGATGGAGATGGACCTTTTGGCGGAGAGATTATCCGAAATTTTGGAATGGAAGTCAGTGTG GATATGACCCCGGTGGTAGGTCGTGTGATCGGGCCACCTGAATTGAAGCTAGGTGCTCCAAATGGAAGGGTGATGAAAGTACCTGTTGACGAGAAGTGTC AATGGAATCTTGTTGGAAAAGGAGTGGTGGAAGGGAAACCAATTGAGCGTTGGGCTGTTCTTGACTTCAGCTCTGATGATTATCAGTGTCCATTAAATGC TGACCATTTCATCCCAAAGCTTATTGCTCGGTGCCTGAAACTGGGGATTCGCATGGAAGAGCCTCTCTTTTATGAACCTACTAGCATGCGGTTGTTCTCT AACTCTAATGTTGATAGGCTTCGTGAACTCCTTGAAAGAGTCAATGGCCGGGCTCGCAAAATCTCTAGAGGCCAGTTGCAGTTTCTTCTCTGTGTCATGT CAAAGAAGGATCCTGGTTACAAGTATCTCAAATGGATTTGTGAAACCAAAGTTGGTATTGTGACACAATGCTGTCTGTCTCGTTCTGCGAATAAAGTAAA TGATCAGTACCTTGCCAATATTGGTCTCAAGATTAATGCTAAGCTTGGAGGAAGCAATGCAGAGCTCAGCGACAGACTTCCATACTTTGGGGATGAAAAC CACGTCATGTTTATTGGGGCTGATGTCAACCATCCTGCTGCTCGAAACACAACAAGTCCATCCATTGCTGCTGTTGTTGGTACTACAAATTGGCCAGCTG CAAATCGCTATGCAGCTCGAGTTCGTCCTCAGGACCATCGTTGTGAGAAGATTCTGAATTTTGGTGATATGTGTTTGGAGCTTGTTGAATTTTATTCTCG GCTCAATAAAGCAAAACCTGAGAAGATTGTGATATTCCGTGATGGGGTCAGTGAGGGCCAGTTTGATATGGTTCTCAATGACGAGTTAATGGACATCAAG AGGGCGTTCAGGTCAATCATGTACACCCCAACCATCACACTCATTGTTGCCCAGAAGCGGCACCAGACTCGTCTTTTTCTTGAGGATGGGGGGCGAATAG GCAATGTGTCTCCGGGTACAGTTGTGGACACAAAAATTGTCCATCCTTTCGAGTATGATTTTTACCTCTGCAGCCACTACGGAAGCCTTGGGACAAGCAA GCCCACACATTACCATGTTCTATGGGATGAGCATGGCCTCAGTTCTGATCAGTTGCAGAAGCTCATATATGACATGTGCTTTACATTTGCTCGTTGCACT AAACCTGTGTCGTTAGTTCCACCTGTCTACTATGCTGACCTTGTTGCTTATAGAGGAAGGCTCTACCATGAGGCAGTAATGGAAGGGCAGTCTCCATCTT CTGTATCATCTTCATCATCTTCAAGGACTTCATCATCTCTGTCAGTGGGAGCTTCGTTGGAAGAGAGGTTCTGTATGCTGCATGCAGACCTGGAAAACAT CATGTATTTTGTTTGA
AA sequence Show only first row Show all	>Potri.012G118700.3 pacid=42783172 polypeptide=Potri.012G118700.3.p locus=Potri.012G118700 ID=Potri.012G118700.3.v4.1 annot-version=v4.1 MPKGLASSSSDNANRVSPVQRPDTGGKLAVRTPRLLVNHFPVKFSPKSIIRHYDVDIKQEVPPKHGRPGKISKSILTMIRDKLFTDDPSRFPLGKTAYDR EKNIFSAVPLPTGTFRVEVSEAEDAKPRSYLFTIKLVNELQLRKLKDYLDGTLRSVPRDILQGMDVVVKEHPARTMISVGRGFHSVRAHQDYLGYGIIAS KGCQHSLKPTSQGLALCLDYSVLSFHEPVSVIDFLTKHICGFNLNNFRRCRGDVEIALKGLKVRVTHRVTKQKYVIVGLTRDDTRDITFSQEDPDGKASQ NVRLVDYFRQKYGRDIVHQDIPCLEMKSNMRNYVPMEYCVLVEGQVFPKEHLQRDEAQMLKDISLAKAKDRQKTICSMVRDGDGPFGGEIIRNFGMEVSV DMTPVVGRVIGPPELKLGAPNGRVMKVPVDEKCQWNLVGKGVVEGKPIERWAVLDFSSDDYQCPLNADHFIPKLIARCLKLGIRMEEPLFYEPTSMRLFS NSNVDRLRELLERVNGRARKISRGQLQFLLCVMSKKDPGYKYLKWICETKVGIVTQCCLSRSANKVNDQYLANIGLKINAKLGGSNAELSDRLPYFGDEN HVMFIGADVNHPAARNTTSPSIAAVVGTTNWPAANRYAARVRPQDHRCEKILNFGDMCLELVEFYSRLNKAKPEKIVIFRDGVSEGQFDMVLNDELMDIK RAFRSIMYTPTITLIVAQKRHQTRLFLEDGGRIGNVSPGTVVDTKIVHPFEYDFYLCSHYGSLGTSKPTHYHVLWDEHGLSSDQLQKLIYDMCFTFARCT KPVSLVPPVYYADLVAYRGRLYHEAVMEGQSPSSVSSSSSSRTSSSLSVGASLEERFCMLHADLENIMYFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.012G118700 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145562 [exp]	1.00	0.8774
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.001G283000 [exp]	2.82	0.8071
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G027700 [exp]	6.48	0.7574
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	9.16	0.7632
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.002G129400 [exp]	12.64	0.7350	PDE135.2
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.007G128900 [exp]	13.26	0.7638
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445700 [exp]	14.14	0.8049
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009300 [exp]	16.61	0.7466
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054500 [exp]	19.62	0.7249
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121851 [exp]	23.23	0.7683

Compare expression of checked genes

Potri.012G118700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.