Plant FIBer expression Database

Potri.012G118800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05320 587 / 0 O-fucosyltransferase family protein (.1)
AT3G26370 42 / 0.0008 O-fucosyltransferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G117500
[exp]
841 / 0 AT3G05320 582 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018291
[exp]
669 / 0 AT3G05320 563 / 0.0 O-fucosyltransferase family protein (.1)
Lus10040618
[exp]
669 / 0 AT3G05320 563 / 0.0 O-fucosyltransferase family protein (.1)
Lus10029239
[exp]
44 / 0.0003 AT1G29200 698 / 0.0 O-fucosyltransferase family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF10250 O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence
>Potri.012G118800.1 pacid=42783685 polypeptide=Potri.012G118800.1.p locus=Potri.012G118800 ID=Potri.012G118800.1.v4.1 annot-version=v4.1
ATGGACTTGGCCTCTAATTGCAAGTATCAGATGTTCTTTGGGAGAAACTTGAATTCTATAACATGTAAAGGTCTTGCTTTGATTGTTATTGCTCTGTTTC
TTAGAGTTGTGCTGCTTCCTTCATTCTCTGGTTATGGTGGGATAGATAAAAATAATCTTGATTTGGTTCATAGCCGGTCTTTGTCCTTGGATTCTGATAA
TGGAATTCGCAAAGATAAATTCTTGGAAGTTCCTCAGATAGTATGGGGACTAAACAATCAAAAGATAGCATTTGCAAGAGCTTGTCTAACTGCTAGAATG
CTGAACCGAACTCTGCTAATGCCTAGTTTAAGTGCCTCCCTGTTCTATAAGGAAATAGATCGCCTCCAGCCTATTTCCTTTGATAAGGTGTTCCAATTTG
AGAGGTTTAATTCCCTCTGTAATGGGTTTGTGCAGTTGGGCAGTTATTCAGACCTTAGGAATCAAACTGGAGTGTATGAGCTACAGAAGGGAAGTGGGAG
GAAGTGGACTGTTGAGAGGGATTTGGATCAACTGAAACAGCTTAGCAATGATCCATTTGATGGATATGAGGTAATTAGAATAGTTGGGAAGAATCCGTTT
TTGTGGCATGATCATTGGCCCGTTAAGGACTATGCCATGGTCTTTGAATGCTTAGTTTTGGTTGATGAGATAGCTAGAGAGGCAGATAGAGTTGTGTCAA
AGATTAGAGAAGTAGGAAAGGAAATGAGCAGCAGAAGTGGCTCCGCTCAAAGCGATTTTGGTCCTGATAGCTCTCTGTTGGAGCCAGTGCCTTACGTGGC
AGTTCACATGAGGATAGAGATTGATTGGATGATTCACTGCAAGAAGTTAGAGCGGAAATTAAATGTTAGTGAAATCTGTAGCAGCAAGCGGGAGATTATG
GAGAGAGTGGGGAACATTGTAGGCCTAAAAGGTCCTACTGTTGTTTATCTCGCTGTAGCTGATAGTCTTCTTGAAGATTCTTCTATACTCACAGGGTGGA
AGGAAGGTTTGCTTCCTGTTGAGAAGAATAAACTCGGCGTCGATGGAATTTATAATAAATACCCATATCTCATTCAGTCAGCAATAGATTATGAAGTTTG
CTCAAAGGCTGATGTTTTTGTTGGGAACAGTTTCTCAACATTTTCAAGCCTCGTAGCTCTCGAGAGAACACAGAAGATGATTAGAATGGGCGTTACAAGC
TCGTGTGGCGCGGGTGTAAGATGGCCTTCATATGCATACAATATATTGGGGGAATCCAATGGTCCTCATAAATGGATGACAAATATGTCTGATTCAAGCC
TGAAAGCAATCAGCTATGGTTCTAATATCATCACCTGTTGA
AA sequence
>Potri.012G118800.1 pacid=42783685 polypeptide=Potri.012G118800.1.p locus=Potri.012G118800 ID=Potri.012G118800.1.v4.1 annot-version=v4.1
MDLASNCKYQMFFGRNLNSITCKGLALIVIALFLRVVLLPSFSGYGGIDKNNLDLVHSRSLSLDSDNGIRKDKFLEVPQIVWGLNNQKIAFARACLTARM
LNRTLLMPSLSASLFYKEIDRLQPISFDKVFQFERFNSLCNGFVQLGSYSDLRNQTGVYELQKGSGRKWTVERDLDQLKQLSNDPFDGYEVIRIVGKNPF
LWHDHWPVKDYAMVFECLVLVDEIAREADRVVSKIREVGKEMSSRSGSAQSDFGPDSSLLEPVPYVAVHMRIEIDWMIHCKKLERKLNVSEICSSKREIM
ERVGNIVGLKGPTVVYLAVADSLLEDSSILTGWKEGLLPVEKNKLGVDGIYNKYPYLIQSAIDYEVCSKADVFVGNSFSTFSSLVALERTQKMIRMGVTS
SCGAGVRWPSYAYNILGESNGPHKWMTNMSDSSLKAISYGSNIITC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G05320 O-fucosyltransferase family pr... Potri.012G118800
[exp]
0 1
AT2G33120 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-A... Potri.001G050400
[exp]
2.23 0.9337
AT3G15940 UDP-Glycosyltransferase superf... Potri.001G179000
[exp]
4.12 0.8839
AT3G54140 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE T... Potri.006G096800
[exp]
4.24 0.9070
AT2G25800 Protein of unknown function (D... Potri.006G238200
[exp]
4.24 0.8962
AT4G18930 RNA ligase/cyclic nucleotide p... Potri.017G062400
[exp]
5.09 0.8772
AT3G03210 unknown protein Potri.017G139800
[exp]
7.48 0.9071
AT1G22060 unknown protein Potri.008G029800
[exp]
8.94 0.9016
AT3G63120 CYCP1;1 cyclin p1;1 (.1) Potri.002G052800
[exp]
10.09 0.8987
AT5G03040 IQD2 IQ-domain 2 (.1.2.3) Potri.016G086300
[exp]
11.83 0.8920
AT5G35750 AHK2 histidine kinase 2 (.1) Potri.014G164700
[exp]
15.06 0.8145

Potri.012G118800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.