Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19670 623 / 0 RING/U-box superfamily protein (.1.2) AT5G60250 189 / 1e-52 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G25360 176 / 3e-50 RING/U-box superfamily protein (.1) AT2G25370 178 / 7e-49 RING/U-box superfamily protein (.1.2) AT3G53690 157 / 8e-44 RING/U-box superfamily protein (.1) AT5G37560 154 / 2e-41 RING/U-box superfamily protein (.1) AT3G45580 152 / 8e-41 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45470 140 / 1e-38 IBR domain containing protein (.1) AT3G14250 138 / 9e-37 RING/U-box superfamily protein (.1) AT2G26135 136 / 2e-35 RING/U-box protein with C6HC-type zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117600 [exp] 855 / 0 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.006G104700 [exp] 196 / 1e-55 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G150100 [exp] 191 / 3e-54 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.018G064400 [exp] 160 / 5e-44 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 157 / 6e-44 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.001G037200 [exp] 142 / 3e-38 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.006G123500 [exp] 108 / 2e-26 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 108 / 2e-26 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 105 / 1e-25 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038341 [exp] 732 / 0 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 727 / 0 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10040616 [exp] 363 / 3e-121 AT4G19670 278 / 3e-88 RING/U-box superfamily protein (.1.2) Lus10018293 [exp] 324 / 3e-106 AT4G19670 285 / 9e-91 RING/U-box superfamily protein (.1.2) Lus10036128 [exp] 207 / 3e-60 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036127 [exp] 168 / 3e-45 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10000412 [exp] 152 / 3e-41 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10026104 [exp] 147 / 1e-39 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10024093 [exp] 128 / 2e-33 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10022063 [exp] 104 / 5e-25 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Potri.012G119000.1 pacid=42783345 polypeptide=Potri.012G119000.1.p locus=Potri.012G119000 ID=Potri.012G119000.1.v4.1 annot-version=v4.1 ATGGAGGGTCAAGCAGCTTTTTGTGATGGGTCTTCAGCAAGTTTAGTTAGTGGGGAAATGAAATTGGAGGAGGACGAGGAAGAGTTTCGTAGCTGTTGTG AAGATGAAGAAGTCTGGAAAGAGATCGAGGAAATAGTGAAGGAAGAGTCGAAGGAAGATCTTGATGAATTTTCAGTGAATATGTTTTTCAAGGGGATGTC AATTGCAGAGGATGGAGACTCTTGTTCTGGGTTCTCTGGAATTGGTGTTGTCATGGAAAGGACCGAACATGTTCCTGTTATTCAGGTGCAAAAGAAGCTT GATTTCTTTGTGGAGGAATCTGTTGCTGATTATTTGGCTCTTATGGATGGCCTTGCTGAGGCTATGCAGAATAATATCCGCCGCGTGTATGCATTCACTG ACTCTGAGTTGTTATATGGTCAGATAACAAATGAGGAGGAAGTTGAGGTTCCACTTCTGATAGCGCTGAGGCAAAGGATCCTTGAACGTGTCAGCAACCT GGAAGCTTTCATTCTGAAACTCAGTCCTTGCTTTGATCTTGAGAGGCCATTACGCTTAGCACAGGTAGCAGTTGGGGTTGTTTCTTTTCCGGCCAATGGG AGTGAATCCCGTGATAACTGTTCTATCTGTTGTGAGGATAAGATATCACCAATGATGATAACAATGAAATGTTCCCACAAATTCTGCTCACATTGTATGA GGACCTATGTTGATGGAAAAGTACAGTCATCTCAAGTACCAATCAGATGCCCTCAGTCAGGATGCAAATATTGCATTTCCATCAATGAATGCAGAACATT TCTTCCTCTCATTTCTTATGGATCCCTGGAGAAAGCCCTGGCTGAAGCTGATATTCTCCATTCAGATAGAATCTACTGCCCCTATCCAAATTGTTCTGTC CTGCTTGATCCTCGAGAATGTTTGTCAGCTAGGGCAAGTTCATCAAGTCAGTCTGATAATACATGTATTGAGTGCCCTGTTTGTCAAAGGTTTATCTGTG TGGAATGTAGCGTTCCTTGGCATTCTTCCATGAGCTGTGAAGAGTTCCAGAACCTCCCATTAGAGGAGAGGGATGCTACAGACATTACATTGCATCGTCT GGCACAAAATAAAAGATGGAGGCGTTGTCAACAGTGCCGCAGGATGATTGAGCTCTCTCAAGGTTGCTATCATATGACCTGCTGGTGTGGGCATGAGTTC TGTTATTCTTGCGGTGCTGAATACAGGGACAGGCAACAGACCTGTCAGTGTGTCTTTTGGGATGATGACAATTCTGAAGATTTGGTCACCCAATCATTTC AAGAATCAGAACAATGGGCATGGGAGACTTTTAATTCACTACCCATGCTTATGGATGCATACTCAGAACAAGAGAGATCGCAGCTGGAACTAATTCAAAG ATTCCTTGCTGGGGGTTTCAGTCTGAGTGACCACCATCCATACCAATCTCCACCCCGCTGTACAGACTCATATGTAGATGCGATAAAGGATCTTCATCAG CTTCCTTGGCTTGAGAGGTTTGTCTCTGTAATAAGCGACAATTATTACGAAGACTATATCTAA
AA sequence Show only first row Show all	>Potri.012G119000.1 pacid=42783345 polypeptide=Potri.012G119000.1.p locus=Potri.012G119000 ID=Potri.012G119000.1.v4.1 annot-version=v4.1 MEGQAAFCDGSSASLVSGEMKLEEDEEEFRSCCEDEEVWKEIEEIVKEESKEDLDEFSVNMFFKGMSIAEDGDSCSGFSGIGVVMERTEHVPVIQVQKKL DFFVEESVADYLALMDGLAEAMQNNIRRVYAFTDSELLYGQITNEEEVEVPLLIALRQRILERVSNLEAFILKLSPCFDLERPLRLAQVAVGVVSFPANG SESRDNCSICCEDKISPMMITMKCSHKFCSHCMRTYVDGKVQSSQVPIRCPQSGCKYCISINECRTFLPLISYGSLEKALAEADILHSDRIYCPYPNCSV LLDPRECLSARASSSSQSDNTCIECPVCQRFICVECSVPWHSSMSCEEFQNLPLEERDATDITLHRLAQNKRWRRCQQCRRMIELSQGCYHMTCWCGHEF CYSCGAEYRDRQQTCQCVFWDDDNSEDLVTQSFQESEQWAWETFNSLPMLMDAYSEQERSQLELIQRFLAGGFSLSDHHPYQSPPRCTDSYVDAIKDLHQ LPWLERFVSVISDNYYEDYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19670			RING/U-box superfamily protein...		Potri.012G119000 [exp]	0	1
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Potri.009G006900 [exp]	3.00	0.7970
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.004G105700 [exp]	3.16	0.8413
AT1G51350			ARM repeat superfamily protein...		Potri.009G053400 [exp]	3.60	0.7795
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.001G150600 [exp]	6.00	0.7838
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Potri.004G054300 [exp]	6.63	0.8378
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.017G050700 [exp]	7.74	0.8082
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G081200 [exp]	8.66	0.8340
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	9.16	0.8008
AT2G23360			Plant protein of unknown funct...		Potri.007G046100 [exp]	10.58	0.8232
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.013G041000 [exp]	13.41	0.7950

Compare expression of checked genes

Potri.012G119000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.