Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17200 357 / 8e-121 Pectin lyase-like superfamily protein (.1) AT4G35670 333 / 6e-112 Pectin lyase-like superfamily protein (.1) AT5G27530 327 / 7e-109 Pectin lyase-like superfamily protein (.1) AT5G44840 313 / 2e-104 Pectin lyase-like superfamily protein (.1) AT3G15720 308 / 3e-101 Pectin lyase-like superfamily protein (.1.2) AT5G44830 286 / 3e-94 Pectin lyase-like superfamily protein (.1) AT1G80170 284 / 4e-92 Pectin lyase-like superfamily protein (.1) AT4G32375 275 / 5e-88 Pectin lyase-like superfamily protein (.1) AT2G43870 267 / 2e-86 Pectin lyase-like superfamily protein (.1) AT2G43890 264 / 7e-85 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028700 [exp] 390 / 1e-133 AT5G27530 362 / 2e-121 Pectin lyase-like superfamily protein (.1) Potri.006G252900 [exp] 322 / 2e-107 AT5G44840 297 / 3e-98 Pectin lyase-like superfamily protein (.1) Potri.007G144100 [exp] 274 / 5e-89 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006700 [exp] 272 / 3e-88 AT2G43890 591 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 272 / 6e-88 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 270 / 6e-87 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 269 / 6e-87 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.007G145300 [exp] 268 / 2e-86 AT2G43890 566 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 267 / 4e-86 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040610 [exp] 395 / 2e-135 AT5G17200 346 / 7e-116 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 362 / 8e-123 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10016940 [exp] 357 / 1e-120 AT5G17200 320 / 6e-106 Pectin lyase-like superfamily protein (.1) Lus10014826 [exp] 346 / 1e-115 AT5G17200 301 / 1e-97 Pectin lyase-like superfamily protein (.1) Lus10036035 [exp] 324 / 6e-109 AT3G15720 339 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10040604 [exp] 295 / 2e-97 AT3G15720 249 / 1e-79 Pectin lyase-like superfamily protein (.1.2) Lus10018302 [exp] 285 / 7e-95 AT5G17200 242 / 3e-78 Pectin lyase-like superfamily protein (.1) Lus10002727 [exp] 287 / 5e-94 AT3G15720 254 / 9e-81 Pectin lyase-like superfamily protein (.1.2) Lus10002123 [exp] 280 / 3e-91 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 273 / 3e-88 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.012G119700.1 pacid=42783906 polypeptide=Potri.012G119700.1.p locus=Potri.012G119700 ID=Potri.012G119700.1.v4.1 annot-version=v4.1 ATGAAGTGCCTAGTTACCGTATTGTTCTTCTTGTGGATGGCTTCCTATTGCTCATGCCGTCTAATATCTGAGGCTACTGGAAGGAGGTTTAATGTGCTCG ACTATGGTGCTGATGGAAATGGCAAAATCGATGCTACACCGGCTTTCCAAAAAGCATGGGGGGATTTCTGTCAAGCAAGTGAAGAAATGCCAACCCTTGA AGTACCAGCAGGGAAGACGTTCTTGTTGAAGTCGGTCTCATTCAGTGGCCCTTGCATGTCCAAGAACCCTCATGTTTTGATCGAAGGTACAATCGTTGCA CCAAACAGCTTTGATTCATGGGATGATGATGATTATGAAAAATGGATTGGATTCACAGCCGTTGTTGGTCTCATTGTTGATGGAGGGGGAAGATTTGATG GACGAGGAGAAGCTTGGTGGAAAGCTTGCAATGATAATGATAGTGCCTGCTCGAAACGTCGCCAGGCTCTCCATTTCAACAAATGCAATGGTCTCCGCCT AAGTAACTTGCACCATGTCAACAGCCAAAAAGGTCACATATGCATAAATGCATGTGATGATGTCGAAGTCTCCAATCTTCAAATCCTTGCACCAGATGAG AGCCCAAATACTGATGGGATTGATATCTCTGAGTCAAACCATGTCAACATCCACGACTCTTTTATAGGAACCGGTGATGACTGTATTGCCATCAATGGTT TTTCCACTTCCATTAATGTTACTGGTGTCAAATGCGGACCAGGCCATGGTATAAGTATTGGAAGTCTAGGAAAGGATGGAGCCTATGAAACAGTAGAAGA TGTCCATGTTAAAAGCTGTGCCTTCAAAGGAACTCAGAATGGTGTACGAATCAAGACATGGGAGACCGGATCAGGATATGTCAGGAAGATCACATTTGAG GATATCACATTTGTAAATTCCGAAAACCCTATTATTATTGACCAACAGTACAATCCTAATGGAAACAGGGGTGGCTCAGGAATAAAAATCAGCGATGTTA CATACCGCAATGTGCGTGGATCTTCAGCTGATGAGGTAGCAATCGCTTTGAATTGTGCTGGCAAAGCGGCTTGCACCAACATTGTAATGGACAACGTTAA AATTACCTCCTCCAATCCTGGAAAACAAATACGCGCCTCTTGCAATAATGCCAAGGGAACTGCCATCTCTGCCTCTCCAACTGTGCCCTGCCTATCAAGT TGA
AA sequence Show only first row Show all	>Potri.012G119700.1 pacid=42783906 polypeptide=Potri.012G119700.1.p locus=Potri.012G119700 ID=Potri.012G119700.1.v4.1 annot-version=v4.1 MKCLVTVLFFLWMASYCSCRLISEATGRRFNVLDYGADGNGKIDATPAFQKAWGDFCQASEEMPTLEVPAGKTFLLKSVSFSGPCMSKNPHVLIEGTIVA PNSFDSWDDDDYEKWIGFTAVVGLIVDGGGRFDGRGEAWWKACNDNDSACSKRRQALHFNKCNGLRLSNLHHVNSQKGHICINACDDVEVSNLQILAPDE SPNTDGIDISESNHVNIHDSFIGTGDDCIAINGFSTSINVTGVKCGPGHGISIGSLGKDGAYETVEDVHVKSCAFKGTQNGVRIKTWETGSGYVRKITFE DITFVNSENPIIIDQQYNPNGNRGGSGIKISDVTYRNVRGSSADEVAIALNCAGKAACTNIVMDNVKITSSNPGKQIRASCNNAKGTAISASPTVPCLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17200			Pectin lyase-like superfamily ...		Potri.012G119700 [exp]	0	1
AT5G05800			unknown protein		Potri.010G190650 [exp]	14.73	0.8142
AT1G27461			unknown protein		Potri.002G117700 [exp]	15.77	0.9043
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.019G081300 [exp]	18.43	0.9096
AT1G77780			Glycosyl hydrolase superfamily...		Potri.010G088500 [exp]	30.06	0.9002
AT1G76820			eukaryotic translation initiat...		Potri.011G132300 [exp]	31.62	0.7934
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.009G138600 [exp]	33.24	0.8995
AT5G40270			HD domain-containing metal-dep...		Potri.009G147750 [exp]	41.26	0.8578
					Potri.008G135001 [exp]	42.04	0.8987
AT4G36490		ATSFH12	SEC14-like 12 (.1)		Potri.007G020300 [exp]	43.47	0.8984	Pt-LJPLP.1
AT4G01290			unknown protein		Potri.004G073400 [exp]	47.64	0.8984

Compare expression of checked genes

Potri.012G119700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.