Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10180 808 / 0 unknown protein AT5G49830 323 / 3e-99 EXO84B exocyst complex component 84B (.1.2.3) AT1G10385 320 / 7e-98 Vps51/Vps67 family (components of vesicular transport) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G118500 [exp] 1214 / 0 AT1G10180 788 / 0.0 unknown protein Potri.015G119300 [exp] 944 / 0 AT1G10180 628 / 0.0 unknown protein Potri.008G009100 [exp] 319 / 2e-97 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.016G063700 [exp] 316 / 3e-96 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.010G249900 [exp] 313 / 3e-95 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.014G195400 [exp] 177 / 5e-46 AT1G10180 215 / 8e-59 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018297 [exp] 947 / 0 AT1G10180 858 / 0.0 unknown protein Lus10040609 [exp] 947 / 0 AT1G10180 854 / 0.0 unknown protein Lus10034843 [exp] 327 / 2e-100 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10035756 [exp] 319 / 2e-97 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 318 / 6e-97 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10017692 [exp] 296 / 5e-89 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033648 [exp] 285 / 2e-84 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033387 [exp] 225 / 3e-63 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10022896 [exp] 199 / 4e-53 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 172 / 6e-45 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF16528 [poplar] [flax] Exo84_C Exocyst component 84 C-terminal
Representative CDS sequence Show only first row Show all	>Potri.012G120000.1 pacid=42783841 polypeptide=Potri.012G120000.1.p locus=Potri.012G120000 ID=Potri.012G120000.1.v4.1 annot-version=v4.1 ATGGAGAGCAGTGAAGAAGACGATGATTTCCCTTTTATAGAAAGCATTACTCCTCAGTCCAAGATCGACTCTTTGTATCAATCTCACACTGAAAAGGGAA TCAGAAAAGTTTGTTGTGAACTCATTGATTTGAAGGATGCAGTGGAAAATCTATGCGGCAATATGGAAACAAAGTACTTAGCTTTCTTGAGAATGTCTGA AGAAGTAGTGGAAATGGAGCATGAGTTGATTGAGTTGAGAAAGCATATTTCTGCACAACGGATTCTTGTGCAGGATTTGATGACTGGGGTTTGCCGTGAA CTGGAAGAGTACAACTCTGCTAATGGTGACATTGGTGATTCTCAGCAAGACCTTCAAGTTGATGAACTTCAAAGTTCCTTGCCAAGTGACACAGATATTC GGAAAGAAATATTCTTGGAGAATATTGATGTTCTCCTGGCTGAACATAAAGTGGAAGAAGCAATCGAAGCTTTGGAAGCTGAAGAGAAATACTGTCCGGA GCTGAAAGGTCCTGGAGATACCTCATCCACGGAAGCATCATATAGATCAGTGTTTTTGAAGAGAAAGTCAATGCTTGAGGATCAACTGATTGGGATTACT GAACAGCCTTTGGTTGGCATTCTGGAACTAAAGAAAGCTTTATCTGCATTGATCAAGATTGGGAAAGGTCCTTTGGCGCATCAACTACTGCTAAAATCAT ATGGGTCCCGCCTCCAAAAGAGTATTGAGGTTTTCCTTCCTTCATGTTCCGTGTATCCCAAAACATTTCCTGCTACACTATCCAGGCTTATGTTTTCAAT AATTTCGGTGACAACAAAAGAATCTGGTTCAATTTTCGGTGATAATCCTGTATATACCAATAGGCTCGTTCAGTGGGCAGAGTGGGAAATCGAATACTTT GTACGGTTGGTTAAGAATAATGCACCCTCTTCTGAGACAGTTTTTGCTTTGGGTGCAGCTAGCAATTGTGTTCAGGCTAGTCTTACATACTGCTCAATGC TGGAATCACAAGGTCTGAAACTGTCGAAGTTGCTTTTGGTCCTATTACGACCATACATTGAAGAAGTGTTAGAGTTTAATTTTAGACGGGCCAGAAGGGA AGCTCTGGATGTGGCAGAAATGGATGAGAGCTCACTTTTGTCACCTCATTCTATGTCTCCATTATCTGCATTTGCAACTTCATCAGACAGTGTGCTTGTT GATAGTGGAATGAAATTCATGGACATCGTTGAGGATATATTGGCACAGCTTACGCCCATGGCTGTCTTGCATTTTGGAGCAAATGTATTGACAAGAATTT CACAGTTGTTTGATAAATACATGGATATGCTATTTAAGTCCCTACCAGGCCCCTCTGATGATGACAATCTCACAGAGCTGAAGGAGGTTATACAATTCAG AGCTGAAACTGATTCGGAGCAGCTTGCACTTTTGGGATTAGCATTTACTATTCTGGATGAACTTCTACCACTTGCTGTAATGAGAGTTTGGAGTCTAAAA AATGAAAGCAATGAGTTGGAAAGTGAAAGTACTGTGCCTAATGCAAGCATTACTGCAGAACTGAAGGAATGGAAGCGCAACCTTCAGCATTCTTTTGACA GGCTTAGAGATCACTTCTGTCGGCAATATGTTTTGAGCTTCATCTATTCTAGAGAAGGAAAAACACGATTAAACGCACTAATTTATTTAAGTGGGGAAGG GGAGGATTTGTACTGGGGCTCTGATCCTCTTCCATCGTTGCCATTTCAGGCCTTATTTGCAAAGCTTCAGCAATTAGCAATTGTGGCTGGAGACGTGCTG CTTGGGAGAGAGAAAATACAGAAAAATTTGCTTGCTAGGCTAACTGAGACTGTTGTGATGTGGCTGTCTGAGGAGCAGGAATTCTGGGATGTATTCGAGG ATGAATCAGTTCCACTCAAACCACTTGGCTTGCAGCAGTTAATACTTGACATGCATTTCACTGTTGAAATTGCTTGTTTTGCCGGTTACCCATCTCGACA TGTGCAACAGATTGCATCAGCTATAATTACTCGAGCAATCAGGACCTTCTCAGCTAGAGGCATAGATCCACAAAGTGCACTTCCTGAGGATGAATGGTTC GTTGAAACTGCAAAGACAGCCATCAATAAACTTCTGTTAGGAACATCTGGGTCAGACGCATCTGAGATTGACGAGGACCATGTTATCCTACATGATGAAA TGGTCTCAGACTCCGATGACACTGCTTCTTCCCTTTCATCAATAGAATCATTTGAATCTTTTGCTTCCGCAAGCATGGGTGAACTAGAGAGTCCCGTTTA TTTCACTGGTTCTGAGGGCTGA
AA sequence Show only first row Show all	>Potri.012G120000.1 pacid=42783841 polypeptide=Potri.012G120000.1.p locus=Potri.012G120000 ID=Potri.012G120000.1.v4.1 annot-version=v4.1 MESSEEDDDFPFIESITPQSKIDSLYQSHTEKGIRKVCCELIDLKDAVENLCGNMETKYLAFLRMSEEVVEMEHELIELRKHISAQRILVQDLMTGVCRE LEEYNSANGDIGDSQQDLQVDELQSSLPSDTDIRKEIFLENIDVLLAEHKVEEAIEALEAEEKYCPELKGPGDTSSTEASYRSVFLKRKSMLEDQLIGIT EQPLVGILELKKALSALIKIGKGPLAHQLLLKSYGSRLQKSIEVFLPSCSVYPKTFPATLSRLMFSIISVTTKESGSIFGDNPVYTNRLVQWAEWEIEYF VRLVKNNAPSSETVFALGAASNCVQASLTYCSMLESQGLKLSKLLLVLLRPYIEEVLEFNFRRARREALDVAEMDESSLLSPHSMSPLSAFATSSDSVLV DSGMKFMDIVEDILAQLTPMAVLHFGANVLTRISQLFDKYMDMLFKSLPGPSDDDNLTELKEVIQFRAETDSEQLALLGLAFTILDELLPLAVMRVWSLK NESNELESESTVPNASITAELKEWKRNLQHSFDRLRDHFCRQYVLSFIYSREGKTRLNALIYLSGEGEDLYWGSDPLPSLPFQALFAKLQQLAIVAGDVL LGREKIQKNLLARLTETVVMWLSEEQEFWDVFEDESVPLKPLGLQQLILDMHFTVEIACFAGYPSRHVQQIASAIITRAIRTFSARGIDPQSALPEDEWF VETAKTAINKLLLGTSGSDASEIDEDHVILHDEMVSDSDDTASSLSSIESFESFASASMGELESPVYFTGSEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10180			unknown protein		Potri.012G120000 [exp]	0	1
AT5G58575			unknown protein		Potri.009G074400 [exp]	4.12	0.6866
AT3G01130			unknown protein		Potri.009G125832 [exp]	7.34	0.6798
AT5G08040		TOM5	mitochondrial import receptor ...		Potri.015G058500 [exp]	31.84	0.6190
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Potri.003G215100 [exp]	49.89	0.5795	Pt-THFS.1,FTHFS2
AT1G54210		ATATG12, APG12,...	AUTOPHAGY 12 A, AUTOPHAGY 12, ...		Potri.003G064300 [exp]	53.88	0.5327
AT5G10630			Translation elongation factor ...		Potri.018G006500 [exp]	69.10	0.5867
AT3G49530	NAC	NTL6, ANAC062	NTM1 \(NAC WITH TRANSMEMBRANE ...		Potri.015G004100 [exp]	75.01	0.5886
					Potri.006G071801 [exp]	85.69	0.5502
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Potri.017G077200 [exp]	92.33	0.5613
					Potri.003G203701 [exp]	124.53	0.5233

Compare expression of checked genes

Potri.012G120000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.