Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10155 119 / 2e-34 ATPP2-A10 phloem protein 2-A10 (.1) AT1G31200 110 / 5e-31 ATPP2-A9 phloem protein 2-A9 (.1) AT4G19840 55 / 2e-09 AtPP2A-1, ATPP2-A1 phloem protein 2-A1 (.1) AT2G02240 50 / 1e-07 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT5G24560 49 / 3e-07 ATPP2-B12 phloem protein 2-B12 (.1) AT5G45070 48 / 1e-06 ATPP2-A8 phloem protein 2-A8 (.1) AT2G02360 42 / 5e-05 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02250 42 / 6e-05 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02230 42 / 9e-05 ATPP2-B1 phloem protein 2-B1 (.1) AT1G65390 40 / 0.0005 ATPP2-A5 phloem protein 2 A5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G120280 [exp] 313 / 4e-111 AT1G10155 125 / 1e-36 phloem protein 2-A10 (.1) Potri.015G120100 [exp] 257 / 8e-89 AT1G10155 122 / 2e-35 phloem protein 2-A10 (.1) Potri.015G120200 [exp] 163 / 1e-51 AT1G10155 137 / 4e-41 phloem protein 2-A10 (.1) Potri.012G120340 [exp] 147 / 3e-45 AT1G10155 133 / 1e-39 phloem protein 2-A10 (.1) Potri.015G118900 [exp] 133 / 5e-39 AT1G10155 103 / 5e-27 phloem protein 2-A10 (.1) Potri.015G118800 [exp] 123 / 5e-35 AT1G10155 86 / 4e-20 phloem protein 2-A10 (.1) Potri.015G120000 [exp] 110 / 3e-30 AT1G10155 82 / 6e-19 phloem protein 2-A10 (.1) Potri.015G118850 [exp] 86 / 6e-22 AT1G31200 69 / 3e-15 phloem protein 2-A9 (.1) Potri.015G119100 [exp] 78 / 7e-19 AT1G31200 66 / 4e-14 phloem protein 2-A9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040607 [exp] 135 / 9e-39 AT2G39440 164 / 8e-50 unknown protein Lus10018300 [exp] 134 / 2e-38 AT2G39440 164 / 7e-50 unknown protein Lus10018304 [exp] 50 / 1e-07 AT4G19840 197 / 3e-61 phloem protein 2-A1 (.1) Lus10040603 [exp] 49 / 2e-07 AT1G33920 82 / 2e-19 phloem protein 2-A4 (.1) Lus10018303 [exp] 49 / 3e-07 AT1G65390 84 / 3e-20 phloem protein 2 A5 (.1.2) Lus10040606 [exp] 49 / 3e-07 AT1G65390 87 / 1e-21 phloem protein 2 A5 (.1.2) Lus10018301 [exp] 49 / 4e-07 AT1G65390 87 / 4e-20 phloem protein 2 A5 (.1.2) Lus10040602 [exp] 48 / 1e-06 AT4G19840 191 / 8e-59 phloem protein 2-A1 (.1) Lus10029673 [exp] 43 / 5e-05 AT2G02230 180 / 4e-55 phloem protein 2-B1 (.1) Lus10023207 [exp] 42 / 0.0001 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14299 [poplar] [flax] PP2 Phloem protein 2
Representative CDS sequence Show only first row Show all	>Potri.012G120160.1 pacid=42783008 polypeptide=Potri.012G120160.1.p locus=Potri.012G120160 ID=Potri.012G120160.1.v4.1 annot-version=v4.1 ATGTCAGAGGCAGCTGATCCTGGGGAAGTGGAATATGATGAGCATACGGGTAGGTGGAGGTTTAAGCCAAGGGGATTGCACATCACTTGGAGTAGTAACC CAGATTATTGGACGATGCCTGAGAAAGGGACGGATGGCCCTGCAGAGTTGCTAAAGGTATGCTGGCTTGAAATAGAGGGCTCAACCCCAGAACACCTATC GAAAGGGAAGAGGTATGCACTGAGCTTCAAAATATCTATGACAGAAGACAGATTTGGTTGGCAAGAAGCTCCTGCTTTCATGATGGCTAAGGTAGGGAAG AAAGGAATTGCCAAATGGGCAAGAATCAATCTGGCAGATGTGCAGGTAGATCACGAAATGGAAGTTCCTTTAGGCAAGCTTCAGTTTGAAGTTCCGGAAA ATGCTCAAGATACCACACTCTACTTCGGATTCTATGAATTGTGGTGTGGAGGATGGAAGGGAGGTTTGCGAATTCATGAGGCTGTAGTTGAAAAAATGCC AGATTTACCATCCTAG
AA sequence Show only first row Show all	>Potri.012G120160.1 pacid=42783008 polypeptide=Potri.012G120160.1.p locus=Potri.012G120160 ID=Potri.012G120160.1.v4.1 annot-version=v4.1 MSEAADPGEVEYDEHTGRWRFKPRGLHITWSSNPDYWTMPEKGTDGPAELLKVCWLEIEGSTPEHLSKGKRYALSFKISMTEDRFGWQEAPAFMMAKVGK KGIAKWARINLADVQVDHEMEVPLGKLQFEVPENAQDTTLYFGFYELWCGGWKGGLRIHEAVVEKMPDLPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120160 [exp]	0	1
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G131100 [exp]	5.91	0.9297
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029900 [exp]	7.21	0.9302	DHQD3
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.003G166200 [exp]	9.89	0.9381
					Potri.010G007844 [exp]	11.35	0.9337
AT5G06370			NC domain-containing protein-r...		Potri.013G043100 [exp]	20.04	0.9373
AT1G76800			Vacuolar iron transporter (VIT...		Potri.005G190800 [exp]	21.90	0.9273
AT3G05327			Cyclin family protein (.1)		Potri.013G023000 [exp]	22.44	0.8846
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Potri.010G197500 [exp]	29.66	0.9043
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Potri.016G110100 [exp]	32.17	0.8951	UCP2.3
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.011G060000 [exp]	33.04	0.8644

Compare expression of checked genes

Potri.012G120160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.