Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19840 233 / 2e-76 AtPP2A-1, ATPP2-A1 phloem protein 2-A1 (.1) AT4G19850 148 / 1e-43 PP2A2, ATPP2-A2 ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-A2, lectin-related (.1.2) AT1G33920 142 / 5e-42 ATPP2-A4 phloem protein 2-A4 (.1) AT1G65390 130 / 5e-35 ATPP2-A5 phloem protein 2 A5 (.1.2) AT5G45090 126 / 5e-34 ATPP2-A7 phloem protein 2-A7 (.1) AT2G26820 120 / 7e-31 ATPP2-A3 phloem protein 2-A3 (.1) AT2G02240 112 / 3e-29 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT1G80110 100 / 1e-24 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02360 99 / 2e-24 ATPP2-B10 phloem protein 2-B10 (.1) AT5G45080 98 / 3e-23 ATPP2-A6 phloem protein 2-A6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022000 [exp] 114 / 4e-30 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.018G016000 [exp] 111 / 8e-29 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G266900 [exp] 111 / 8e-29 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 106 / 7e-27 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 103 / 1e-25 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.013G012600 [exp] 99 / 4e-24 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.018G015800 [exp] 99 / 4e-24 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.001G050100 [exp] 87 / 7e-20 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.015G120300 [exp] 85 / 1e-19 AT5G24560 88 / 4e-21 phloem protein 2-B12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018304 [exp] 276 / 1e-91 AT4G19840 197 / 3e-61 phloem protein 2-A1 (.1) Lus10040602 [exp] 260 / 2e-85 AT4G19840 191 / 8e-59 phloem protein 2-A1 (.1) Lus10029674 [exp] 107 / 4e-27 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10042713 [exp] 106 / 1e-26 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10020674 [exp] 103 / 6e-26 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10020673 [exp] 98 / 1e-23 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10029872 [exp] 96 / 4e-23 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10018171 [exp] 95 / 3e-22 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10015208 [exp] 89 / 1e-20 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031473 [exp] 85 / 3e-19 AT1G09155 228 / 1e-74 phloem protein 2-B15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14299 [poplar] [flax] PP2 Phloem protein 2
Representative CDS sequence Show only first row Show all	>Potri.012G120400.1 pacid=42784213 polypeptide=Potri.012G120400.1.p locus=Potri.012G120400 ID=Potri.012G120400.1.v4.1 annot-version=v4.1 ATGGGAGCAGGGAGTTCACACGATGAGGCTTCAGAGTCACAACAGACAGGGGGCGAACCCAGCCGTACTCGGCCACAGTACAACGAAGAGACATCGACAG AGGCAAAACAGAGTGAAACCAAGTTGAAGACGGTGGAGAAAGCACCAGAAGCAAAGCCCCTCGTGATACGACAGGAGAAAGCAGCAGATGTTAAGCCACT TCATGATGCCAAAGCAAAGACAGTAAAAGAAGTCAAGTTACCACATAACTGTGAAGCCATATTAAGAGATGCAGACTCCCCAGTTGACAGGTCTTCAGTG GACAAACTGTATGATCAACTGAGCACTGGAGTTTTCTTGAACCAAAAGAGAAAGAAGTACTGGGTTGAAAAGAAGTGCTACAGAAATTGCTTCATGCTGT TTGCAAAGGATCTATCAATCACTTGGGGAGGAGATACACGTTACTGGAAATGGCCTTCCATATGTGAATCAGGTGATGTCACTGTGGATGTGGCAGAGCT ATTAGATGTTTGCTGGCTGGAAATATATGGGAAATTCAACACAAAAATGCTCTCCCCAGGTATTTTGTATGAAGTTGTATTTGTAATAAAGCTGAAAGAC CCAGCTTATGGATGGGGAGTTCCAGTGAATGTCTCACTGGTTCTCCCAAATGGATACAAGCAAGAACGCAAAGAAAAGTTACAAACAAAACCAAGAGAGC AATGGATTGAAGTGCCAGTTGGCGAGTTAATAACTTCACCAGAAAATGTTGGGGAGATACAATTCGGCATGCATGAATATGATGGCGGAGAATGGAAGAG GGGCCTTGTTATCAAAGGGATTGCCATTCGACCAAAAACTTAA
AA sequence Show only first row Show all	>Potri.012G120400.1 pacid=42784213 polypeptide=Potri.012G120400.1.p locus=Potri.012G120400 ID=Potri.012G120400.1.v4.1 annot-version=v4.1 MGAGSSHDEASESQQTGGEPSRTRPQYNEETSTEAKQSETKLKTVEKAPEAKPLVIRQEKAADVKPLHDAKAKTVKEVKLPHNCEAILRDADSPVDRSSV DKLYDQLSTGVFLNQKRKKYWVEKKCYRNCFMLFAKDLSITWGGDTRYWKWPSICESGDVTVDVAELLDVCWLEIYGKFNTKMLSPGILYEVVFVIKLKD PAYGWGVPVNVSLVLPNGYKQERKEKLQTKPREQWIEVPVGELITSPENVGEIQFGMHEYDGGEWKRGLVIKGIAIRPKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Potri.012G120400 [exp]	0	1
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.014G060500 [exp]	1.41	0.9026
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G131100 [exp]	3.46	0.8760	Pt-CYTGS.5
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Potri.013G087000 [exp]	5.00	0.8614	PIN9.2
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Potri.004G153700 [exp]	5.29	0.8456	AGB1.2
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120280 [exp]	5.29	0.8747
AT5G53500			Transducin/WD40 repeat-like su...		Potri.002G174100 [exp]	6.32	0.8812
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Potri.009G168300 [exp]	9.53	0.8283	Pt-GLUR2.1
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.001G122800 [exp]	10.09	0.8232
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Potri.004G149100 [exp]	14.38	0.7768
AT5G54130			Calcium-binding endonuclease/e...		Potri.015G004200 [exp]	14.42	0.8142

Compare expression of checked genes

Potri.012G120400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.