Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58440 563 / 0 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G22830 557 / 0 SQE2 squalene epoxidase 2 (.1) AT4G37760 556 / 0 SQE3 squalene epoxidase 3 (.1) AT5G24150 360 / 5e-120 SQP1, SQE5 SQUALENE MONOOXYGENASE 5, FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G24160 343 / 2e-113 SQE6 squalene monoxygenase 6 (.1) AT5G24140 327 / 5e-107 SQP2 squalene monooxygenase 2 (.1) AT5G24155 81 / 2e-18 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G120900 [exp] 668 / 0 AT1G58440 745 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.007G007600 [exp] 596 / 0 AT4G37760 795 / 0.0 squalene epoxidase 3 (.1) Potri.005G146700 [exp] 591 / 0 AT1G58440 766 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.002G114500 [exp] 581 / 0 AT1G58440 761 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014376 [exp] 468 / 2e-162 AT1G58440 575 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014378 [exp] 468 / 2e-162 AT1G58440 603 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G120676 [exp] 160 / 3e-48 AT4G37760 170 / 5e-52 squalene epoxidase 3 (.1) Potri.015G121201 [exp] 89 / 3e-21 AT2G22830 132 / 4e-37 squalene epoxidase 2 (.1) Potri.012G121412 [exp] 47 / 1e-06 AT1G58440 42 / 1e-05 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018654 [exp] 605 / 0 AT1G58440 827 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10007718 [exp] 579 / 0 AT1G58440 828 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10039649 [exp] 578 / 0 AT1G58440 791 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10011732 [exp] 570 / 0 AT1G58440 785 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08491 [poplar] [flax] SE Squalene epoxidase
Representative CDS sequence Show only first row Show all	>Potri.012G121136.1 pacid=42783634 polypeptide=Potri.012G121136.1.p locus=Potri.012G121136 ID=Potri.012G121136.1.v4.1 annot-version=v4.1 ATGATTTTTCATTTTGGTATCATGGTTGTTATGACTACATGTCTTTGGTCAAGCAAACATAGGGACAGAAGTTTGAAGAGCTCTGAAAGTGGAATGGGCA AGTTATGCAATGTTGAAAGTCCAGATATAATCATTGTTGGTGCTGGTGTTGCTGGCCCAGCTCTTGCTTACACTCCTGGAGAGGATGGTCGAAGAGTGCA TGTAATTGAAAGAGACTTGACTGAGCCTAACAGAATTGTTGGAGAACTCCTGCAACCTGGAGGTTACCTGAAATTAATTGAATTGGGCCTTGAAGACCGT GTGAGTGAAATTGATGCTCAAAGAGTGCTTGGATATGCAATCTTTAAAGATGGGAAAAGTACCAAACTACCATACCCCTTGGAGAACTTCCATTCAGATG TTGCTGGAAGAAGCTTTCACAATTATTTCAATCATATGATCTTTCCGGGGGTTAAATTGGAACAAGGAACGGTAACAACTCTCATTGAAGAAAATGGGAC TATTAAAGGAGTACAGTACAAAACCAGGGCTGCAACAGAGTTGGGAGCATATGCTCCATTAACAATTGTCTGTGATGGCTGTTTTTCGAATCTGCGGCGG TCTCTTTGCAATCCTAAGGTGAGGATCAATTCATCTCCAATCTTGTTTTATCCTATTAGCAGCACTGAGATTCGCTGTTTGGTAGATGTTCCTGGACAGA AAGTACCTTCCGTTTCTAATGGTGAAATGGCTCGCTATCTGAAAGCTGCAGTAGCTCCCCAGATTCCTCCTGAACTGCACGATGCTTTCATTTCGGCAAT TGACAAAGGGAGCATAAGAACAATGACAAACAGAAGCATGCCAGCTTCTCCTCACCCTACTCCAGGCGCCCTTCTAATGGGGGATGCATTCAGCATGAGG CATCCTTTAACTGGAGGAGGAATGGCTGTAGCTCTGTCAGACATTGTGCTACTACGTGACCTTCTTCGACCTCTGCAGAAGCTCAATGATGCATCTTCCC TTTGCAGATATCTCGAGTCCTTCTACACCCTGCGTAAGCCAGTGGCATCTACCATAAACACATTGGCAGGTGCCCTATACAAGGTGTTTAGTGCATCACC TGATCCAGCTAGAAACGATATACGCCAAGCATGTTTTGACTATTTAAGCCTTGGAGGAGTTTTTTCGAATGGACCCCTAGCTCTACTCTCTGTGGCTATC TATGGTGTCGGCCGCTTAATGCTTCCCTTACCATCACATAAGCGGATATGGACAGGTGCTAGATTGATTTCGGCTGAAGGAATTAGACAAATGTTCTTCC CTGTAAGGGTACCACCATACCACAGAGCTCCTCCGATTGCATGA
AA sequence Show only first row Show all	>Potri.012G121136.1 pacid=42783634 polypeptide=Potri.012G121136.1.p locus=Potri.012G121136 ID=Potri.012G121136.1.v4.1 annot-version=v4.1 MIFHFGIMVVMTTCLWSSKHRDRSLKSSESGMGKLCNVESPDIIIVGAGVAGPALAYTPGEDGRRVHVIERDLTEPNRIVGELLQPGGYLKLIELGLEDR VSEIDAQRVLGYAIFKDGKSTKLPYPLENFHSDVAGRSFHNYFNHMIFPGVKLEQGTVTTLIEENGTIKGVQYKTRAATELGAYAPLTIVCDGCFSNLRR SLCNPKVRINSSPILFYPISSTEIRCLVDVPGQKVPSVSNGEMARYLKAAVAPQIPPELHDAFISAIDKGSIRTMTNRSMPASPHPTPGALLMGDAFSMR HPLTGGGMAVALSDIVLLRDLLRPLQKLNDASSLCRYLESFYTLRKPVASTINTLAGALYKVFSASPDPARNDIRQACFDYLSLGGVFSNGPLALLSVAI YGVGRLMLPLPSHKRIWTGARLISAEGIRQMFFPVRVPPYHRAPPIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.012G121136 [exp]	0	1
AT4G12731			unknown protein		Potri.009G022366 [exp]	8.48	0.7562
AT3G54070			Ankyrin repeat family protein ...		Potri.011G015801 [exp]	16.73	0.6823
					Potri.001G076800 [exp]	19.23	0.6841
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016300 [exp]	21.21	0.6781
AT1G17860			Kunitz family trypsin and prot...		Potri.010G007811 [exp]	24.00	0.6708
AT5G17680			disease resistance protein (TI...		Potri.019G098900 [exp]	27.16	0.6834
					Potri.019G002628 [exp]	30.93	0.6717
AT4G16563			Eukaryotic aspartyl protease f...		Potri.001G158600 [exp]	33.76	0.6535
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281600 [exp]	35.14	0.6670
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023016 [exp]	35.70	0.6376

Compare expression of checked genes

Potri.012G121136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.