Plant FIBer expression Database

Potri.012G121320 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G121136
[exp]
61 / 6e-12 AT1G58440 564 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Potri.015G120900
[exp]
48 / 3e-07 AT1G58440 745 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G121320.1 pacid=42784008 polypeptide=Potri.012G121320.1.p locus=Potri.012G121320 ID=Potri.012G121320.1.v4.1 annot-version=v4.1
ATGTCCATGATTTGCATATGGAAGGTCGCAGTTTTCCAGCACCAACGCAACAAAACACAATGGGATATCAATTATGCAAAAGGAAAGATTAAATTCCAGT
TGGCAAGGAAGATTAAATTATGCAAGCTAAATTCCTATGTTGTGGAAAAGGTTACATGTTACTTCAATATTAGCACACAAGGTTACAAAACTTCAACGAA
GGGATTGTTTTGCAATTTGGCAGCACTGGTCCTCACCTTAGGATTGCAAAGAGACCGCCGCACCACAGATTCGAAAAACAGCCATCACAGACAATTGTTA
ATGGAGCGTATGCTCCCAACTCTGTTCCAGCCCTGGTTTTGTACTATACTCCTTTAA
AA sequence
>Potri.012G121320.1 pacid=42784008 polypeptide=Potri.012G121320.1.p locus=Potri.012G121320 ID=Potri.012G121320.1.v4.1 annot-version=v4.1
MSMICIWKVAVFQHQRNKTQWDINYAKGKIKFQLARKIKLCKLNSYVVEKVTCYFNISTQGYKTSTKGLFCNLAALVLTLGLQRDRRTTDSKNSHHRQLL
MERMLPTLFQPWFCTILL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37760 SQE3 squalene epoxidase 3 (.1) Potri.012G121320
[exp]
0 1
AT3G61510 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCY... Potri.002G163700
[exp]
1.00 0.9972 Pt-ACS1.3
AT5G44440 FAD-binding Berberine family p... Potri.011G158100
[exp]
2.23 0.9912
AT5G57510 unknown protein Potri.018G094100
[exp]
2.44 0.9946
AT2G41380 S-adenosyl-L-methionine-depend... Potri.006G042200
[exp]
3.00 0.9923
AT1G11925 Stigma-specific Stig1 family p... Potri.004G006900
[exp]
3.16 0.9850
AT3G49780 ATPSK3(FORMERSY... phytosulfokine 4 precursor (.1... Potri.014G014000
[exp]
5.19 0.9870
Potri.018G091032
[exp]
6.00 0.9829
AT5G36160 Tyrosine transaminase family p... Potri.017G014200
[exp]
7.74 0.9906
AT4G28940 Phosphorylase superfamily prot... Potri.006G161538
[exp]
12.48 0.9747
AT4G18540 unknown protein Potri.011G064300
[exp]
14.14 0.9917

Potri.012G121320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.