Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19860 756 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G03310 423 / 2e-144 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) AT1G27480 62 / 4e-10 alpha/beta-Hydrolases superfamily protein (.1) AT5G13640 50 / 4e-06 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 49 / 9e-06 Lecithin:cholesterol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G121000 [exp] 1033 / 0 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G076300 [exp] 449 / 9e-155 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Potri.003G063100 [exp] 55 / 1e-07 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.001G171000 [exp] 53 / 5e-07 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.014G014400 [exp] 50 / 2e-06 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017142 [exp] 841 / 0 AT4G19860 748 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018310 [exp] 839 / 0 AT4G19860 749 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10026853 [exp] 430 / 5e-147 AT3G03310 574 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Lus10020225 [exp] 354 / 3e-114 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1) Lus10018308 [exp] 99 / 2e-21 AT1G69550 147 / 1e-35 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10018664 [exp] 59 / 7e-09 AT1G27480 491 / 5e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10007728 [exp] 58 / 1e-08 AT1G27480 484 / 3e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10019519 [exp] 55 / 1e-07 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10017165 [exp] 52 / 8e-07 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10021564 [exp] 50 / 6e-06 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF02450 [poplar] [flax] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.012G121596.1 pacid=42783235 polypeptide=Potri.012G121596.1.p locus=Potri.012G121596 ID=Potri.012G121596.1.v4.1 annot-version=v4.1 ATGGCTATGTTACTAGAAGACATTGTTCGATCGGTGGAGCTATGGCTGAACTTGATAAAAAAACCACAGCCTTATGTGGACCCGAGTCTTGACCCGGTTC TTTTAGTCCCGGGTATTGCCGGTTCGATTTTAAAAGCAGTAGATAAGGATAATGGAGGTAAAGAAGAACGGGTTTGGGTACGGATTCTTGCTGCTGATTA CACCTGTCGAACTAAGCTCTGGTCTCGCTTTGATCCTCAAACTGGACGGTCTGTGACTTTAGATCCAAAGACAAATATTGTGGTTCCTGATGATAGATAC GGGTTGCATGCTATTGATGTATTGGATCCTGACATGATAATAGGACGTGATTGTGTATATTATTTCCATGATATGATTGTTGAAATGATCAAGTGGGGTT TTCAAGAGGGAAAAACTCTTTTCGGGTTTGGGTATGATTTTCGGCAAAGCAACAGGTTACCAGAGACTTTAGAGTGCCTTGCTAAAAAATTAGAGTCAGT ATATAAAGCATCTGGAGGGAAAAAGATAAACATCATAAGTCATTCAATGGGGGGTCTGCTAGTTAAATGCTTCATGTCCCTGCACAGTGATATATTTGAG AAATATGTGAAGAATTGGATTGCCATTGCTGCACCATTCCGGGGTGCACCTGGGTTTGTTACATCTACCTTTCTGAATGGAATGTCATTTGTTGAAGGGT GGGAGCAGAACTTTTTTATATCAAAATGGAGCATGCACCAGCTGCTTATTGAATGTCCTTCAATATATGAATTGATGGCTTGTCCACATTTTCACTGGCA ACATGTTCCTGTTTTGGAAATCTTGAGAGAGAAGAAAGATAATGATGGAAATTCTCAGATAATTCTAGAGTCATATCCCCCTGAAGAGAGCATCCAAGTT TTCAAAGATGCTCTTTCAAGTAACACTGTTGTTTATGATGGAGAGGATCTTCCATTACCTTTCAACTTTGATATTTTGAAATGGGCTGATGAAACACATA ACGTTTTGTCTCGTGCTAAAGTTCCTCCTGGAGTTAAATTCTACAATATCTATGGGATCGATCTGGAAACGCCTCACAGTGTTTGCTATGGAAGTTCAGA GGTACCTGTCACTGATCTACCAGAACTGCAATTTTGTGAGCCTAAATACATTTCTGTAAATGGTGACGGGACAGTTCCTGCTGAATCAGCTAAGGCAGAT GGGCTCAATGCAGAAGCAAGGGTTGGGGTGCCTGGTGAGCACCGTGGAATTCTCAGTGATCGTCATTTATTCAGGATTCTAAAGCACTGGCTGAAGGCAG ATTCAGATCCTTTCTACAATCCAATAAATGATTACGTCATTCTACCCACCGCATTTGAAATTGAAAGGCACAAAGAGAATGGATTCCAATTTACATCTCT TAAAGAGGAGTGGGAAATCATTTCTGAAGAACAAGATGACCATGACAATATGGTTAATAGAAAACCTTTCGTAAGTTCAATCTGTGTTTCACAGACAGGA GATCATCGGTCTTCACCTGCAGAGGCCTGTGCCACCGTAACTGTGCATCCTCATAATGAGGGGAAGCAAGTCCAGCAACATGTGGAGCTAAATGCTCTAA GTGTTTCCGTTGATGCCTGA
AA sequence Show only first row Show all	>Potri.012G121596.1 pacid=42783235 polypeptide=Potri.012G121596.1.p locus=Potri.012G121596 ID=Potri.012G121596.1.v4.1 annot-version=v4.1 MAMLLEDIVRSVELWLNLIKKPQPYVDPSLDPVLLVPGIAGSILKAVDKDNGGKEERVWVRILAADYTCRTKLWSRFDPQTGRSVTLDPKTNIVVPDDRY GLHAIDVLDPDMIIGRDCVYYFHDMIVEMIKWGFQEGKTLFGFGYDFRQSNRLPETLECLAKKLESVYKASGGKKINIISHSMGGLLVKCFMSLHSDIFE KYVKNWIAIAAPFRGAPGFVTSTFLNGMSFVEGWEQNFFISKWSMHQLLIECPSIYELMACPHFHWQHVPVLEILREKKDNDGNSQIILESYPPEESIQV FKDALSSNTVVYDGEDLPLPFNFDILKWADETHNVLSRAKVPPGVKFYNIYGIDLETPHSVCYGSSEVPVTDLPELQFCEPKYISVNGDGTVPAESAKAD GLNAEARVGVPGEHRGILSDRHLFRILKHWLKADSDPFYNPINDYVILPTAFEIERHKENGFQFTSLKEEWEIISEEQDDHDNMVNRKPFVSSICVSQTG DHRSSPAEACATVTVHPHNEGKQVQQHVELNALSVSVDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.012G121596 [exp]	0	1
AT3G14830			unknown protein		Potri.001G386700 [exp]	4.58	0.7160
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Potri.003G107000 [exp]	4.58	0.6826
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.001G073800 [exp]	7.74	0.6849
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Potri.006G099600 [exp]	9.48	0.7241
AT2G06025			Acyl-CoA N-acyltransferases (N...		Potri.006G142100 [exp]	10.81	0.6517
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Potri.001G112700 [exp]	12.96	0.5787
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Potri.014G138800 [exp]	13.85	0.6787	GPX4.1,PtrcGpx4
AT5G15790			RING/U-box superfamily protein...		Potri.004G114800 [exp]	14.66	0.6867
AT4G20070		ATAAH	allantoate amidohydrolase (.1)		Potri.001G160100 [exp]	14.86	0.6300
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Potri.004G092900 [exp]	15.09	0.6042

Compare expression of checked genes

Potri.012G121596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.