Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45030 805 / 0 Trypsin family protein (.1.2) AT2G35155 795 / 0 Trypsin family protein (.1) AT3G12950 642 / 0 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G121400 [exp] 1058 / 0 AT5G45030 821 / 0.0 Trypsin family protein (.1.2) Potri.011G143200 [exp] 807 / 0 AT5G45030 752 / 0.0 Trypsin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038347 [exp] 960 / 0 AT5G45030 834 / 0.0 Trypsin family protein (.1.2) Lus10036208 [exp] 954 / 0 AT5G45030 830 / 0.0 Trypsin family protein (.1.2) Lus10018312 [exp] 862 / 0 AT5G45030 791 / 0.0 Trypsin family protein (.1.2) Lus10017140 [exp] 845 / 0 AT5G45030 776 / 0.0 Trypsin family protein (.1.2) Lus10031205 [exp] 739 / 0 AT5G45030 734 / 0.0 Trypsin family protein (.1.2) Lus10031785 [exp] 726 / 0 AT5G45030 738 / 0.0 Trypsin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G121700.11 pacid=42783660 polypeptide=Potri.012G121700.11.p locus=Potri.012G121700 ID=Potri.012G121700.11.v4.1 annot-version=v4.1 ATGGAAAGGAACAGATTAGGTTTAAGGATTCATCACTCTGGATCCTCACAATCAGAGGAATCTGCTTTAGATTTGGAAAGAAACTACTGCAATCATTTGC CTTGGTCAAGCTTGTCGCCACTTCAACCCTTTACTTCAGGGGGGCAGCACTCTGAGAGTAATGCTGCCTACTTCTCCTGGCCCACATTGAGTCGACTAAA TGATGCAGCAGAAGACAGGGCAAACTATTTTGGAAACCTTCAGAAGGGGGTGCTTCCGGAAACTCTTGGGAGGTTGCCAACAGGGCAGCAAGCTACCACC TTGCTCGAGCTAATGACCATTAGGGCATTTCATAGCAAAATATTGAGGCGGTTTAGTCTTGGAACAGCGATTGGATTTAGAATCCGAAGGGGTATTTTGA CGGATATTCCTGCAATTCTTGTTTTTGTTGCCCGTAAAGTTCATAGGCAATGGCTTAGCCATGTCCAGTGCCTACCTGCAGCCCTTGAGGGACCAGGAGG AGTGTGGTGTGATGTAGATGTTGTAGAATTCTCATATTATGGTGCTCCTGCAGCAACTCCAAAGGAACAGTTGTATACTGATCTCGTGGATGGCTTGAGA GGAAGTGACCCATGCATTGGTTCTGGATCGCAGGTTGCTAACCAAGAGACATATGGAACCCTGGGTGCGATTGTGAAAAGCAGAACAGGTAACCGCCAGG TTGGTTTCCTCACAAATCGGCATGTTGCAGTTGATCTGGACTACCCAAACCAGAAAATGTTTCATCCTTTGCCACCAAGCCTTGGACCTGGGGTGTATTT GGGTGCTGTGGAGAGAGCAACCTCATTTATCACTGATGATCTTTGGTATGGAATATTTGCTGGAACAAACCCAGAAACATTTGTCCGAGCAGATGGGGCC TTCATTCCTTTTGCAGGAGACTTTAACATGAACAATGTAACTACAACTGTCAAAGGTGTTGGCGAGGTTGGTGATGTCCATGTTATAGATTTGCAAGCTC CAATCAATAGTCTCATTGGAAGGCAAGTTGTCAAAGTTGGAAGGAGTTCTGGCTTGACTACTGGGACCATAATGGCCTATGCACTAGAGTACAATGATGA GAAAGGGATTTGTTTCTTTACCGATTTTCTTGTTGTTGGTGAGAACCAACAGACTTTTGATCTTGAAGGTGATAGTGGAAGCCTCATTCTCTTAAAGGGT CAGGATTGTGAGAAGCCACAGCCAGTTGGGATCATTTGGGGTGGGACAGCTAACCGTGGTAGGTTGAAGCTTAAAGTTGGCCTACCCCCAGAAAATTGGA CCAGTGGAGTTGATCTTGGTCGCCTGCTTGACCTCCTTGAACTTGATCTCATTACTACCAATGACGGGCTTCAAGCTGCAGTTCAAGATCAAAGAAATGC ATCAGCACCGGCAATAGATTCAACAGTTGGAGAGTCATCTCCTCTAGACCGAGTGCCATCCAAAGAAAAAATTGAAGAAAACTTTGAGCCTATTAATTTA AACATGCAACAAGGGGTAGTCAAAGGTGAGTCTCAGCAAGGACAGTCTCCACTCTTCATTGGCCCTGAATTTCATATAGAAGATGGGGCAGAAGCAGCTC CTAATGTGGAGCACCAGTTCATCCCAAGTTTCTCAGGGCAATCGCTGATGCATGACAACAAACCTCAGGAAACCCCAGAACTGAAAAACCTATCGGCGTT AAGGAGTGACTCTGATGAGGAGATGTGTTTTTCGTTGCAGTTAGGCAAGCCTGAACCGAAGAGAAGAAAGCAGTTGGATTGA
AA sequence Show only first row Show all	>Potri.012G121700.11 pacid=42783660 polypeptide=Potri.012G121700.11.p locus=Potri.012G121700 ID=Potri.012G121700.11.v4.1 annot-version=v4.1 MERNRLGLRIHHSGSSQSEESALDLERNYCNHLPWSSLSPLQPFTSGGQHSESNAAYFSWPTLSRLNDAAEDRANYFGNLQKGVLPETLGRLPTGQQATT LLELMTIRAFHSKILRRFSLGTAIGFRIRRGILTDIPAILVFVARKVHRQWLSHVQCLPAALEGPGGVWCDVDVVEFSYYGAPAATPKEQLYTDLVDGLR GSDPCIGSGSQVANQETYGTLGAIVKSRTGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGA FIPFAGDFNMNNVTTTVKGVGEVGDVHVIDLQAPINSLIGRQVVKVGRSSGLTTGTIMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILLKG QDCEKPQPVGIIWGGTANRGRLKLKVGLPPENWTSGVDLGRLLDLLELDLITTNDGLQAAVQDQRNASAPAIDSTVGESSPLDRVPSKEKIEENFEPINL NMQQGVVKGESQQGQSPLFIGPEFHIEDGAEAAPNVEHQFIPSFSGQSLMHDNKPQETPELKNLSALRSDSDEEMCFSLQLGKPEPKRRKQLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45030			Trypsin family protein (.1.2)		Potri.012G121700 [exp]	0	1
AT5G39390			Leucine-rich repeat protein ki...		Potri.019G100901 [exp]	2.64	0.8131
AT1G07200			Double Clp-N motif-containing ...		Potri.010G188200 [exp]	5.47	0.8019
AT3G10910			RING/U-box superfamily protein...		Potri.019G057700 [exp]	6.32	0.8004
					Potri.009G051100 [exp]	7.21	0.8016
AT4G27290			S-locus lectin protein kinase ...		Potri.011G154400 [exp]	7.74	0.8116
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Potri.003G030400 [exp]	14.07	0.7581
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Potri.002G033000 [exp]	15.87	0.7888	Pt-CYP722.2
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Potri.009G127900 [exp]	18.76	0.7838
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Potri.004G015600 [exp]	19.05	0.7759	Pt-LCOSC2.7
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G064800 [exp]	19.41	0.7712

Compare expression of checked genes

Potri.012G121700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.