Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35130 850 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G02860 204 / 1e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 200 / 3e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 195 / 2e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 189 / 2e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 185 / 3e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 186 / 4e-51 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 184 / 1e-50 RPF2 rna processing factor 2 (.1) AT1G62680 181 / 6e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 180 / 7e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297300 [exp] 219 / 7e-62 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 210 / 1e-58 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 192 / 7e-54 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 190 / 6e-53 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 191 / 7e-53 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074700 [exp] 188 / 8e-53 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 188 / 2e-52 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G021200 [exp] 188 / 3e-52 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 187 / 1e-51 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018318 [exp] 893 / 0 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017134 [exp] 882 / 0 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10002107 [exp] 230 / 4e-66 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 229 / 4e-65 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006962 [exp] 192 / 1e-52 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 192 / 2e-52 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 190 / 1e-51 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 189 / 3e-51 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 185 / 5e-50 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033127 [exp] 184 / 2e-49 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.012G123600.1 pacid=42782520 polypeptide=Potri.012G123600.1.p locus=Potri.012G123600 ID=Potri.012G123600.1.v4.1 annot-version=v4.1 ATGTTGCTTGTTAGATGCACACTGAATCATATTTTTATAGAATCAAGAATCCGGAATGGTCATTTCAGACGCAGAGAAAAGAATTCCAGTAGTGGAGATG TTAAAAAGTGGAAAAGCGACAGGGTCTATATCGACAAACATGGCAAATGGCGAATCTTTGATCACAAAAAGATGTCCAGGAAACGATGTGGCTCTTTGAG GGGACAAGGATGGAAATATGGATCTGGATTTGTTGATGGAATTTTCCCAGTGCTAAGTCCTGTTGCTCATCAGATTCTGAACTTTGTGCGGAAAGAAGTG GATCCGAATAATGTTTGGGCTGCTCTTGACACTCTTCCTGTCACTCACGAGACTTGGGATGATCTTATTAATGTAGCCGTCCAACTTCGTTTGAATAAAC AATGGGATCCGATTGCACTGATATGTCAATGGATATTGTACAAGAGCTCCTTCCAGACAGATGTCATGTGCTACAATTTACTAATAGATGCTTATGGGCA AAAATCTTTGTACAAGAAGGCAGAAGAGACATATGTTGATCTTCTTCAAGCCAGGTGTATCCCTACTGAAGACACGTATGCCCTCCTTATAAAGGCTTAC TGTGCATGTGGATTGTTAGCAAAGGCTGAAGCTGCCTTTGTTGATATGCGAAAGTATGGCCTTCCTCCAAGTGCAATTGTATACAATGCTTATATTGATG GGTTAATGAAGGCTGGAAACCCTCAAAGAGCAATTGAGATCTTTCAGCGATTGAAAAATGATGGCTGCCAGCCCTCTACTGACACCTATACACTGTTGAT CAACCTTCATGGGAAGGCAAGTCAATCTTACATGGCCTTGAAGTTGTTTAACGAAATGAGAAGTCAAAAATGCAGACCAGATATCTGCACATACACAGCT CTGGTGAACGCGTTTGCTAGAGAGGGACTCTGTGAGAAGGCAGAAGAAATATTTGAGCAGATGCAAGAAGATAAGCTTGAGCCTGATGTGTATACTTACA ATGCGCTCATGGAAGCTTACAGTCGTGCAGGTTTTCCTTACGGGGCTGCAGAAATATTTTCACTCATGCGGCACATGGGCTGTGAGCCGGATAGAGCTTC ATATAACATCATGGTAGATGCGTATGGGAGAGCTGGCCTTCATGAGGATGCTCAAGCGGTATTCAATGAGATGAAGCGACTAGGAATAACCCCTACAATG AAATCACACATGCTACTTCTCTGTGCCTACTCAAGAGCAAGAAATGTGGATAAATGCGAAGAAATTGTTAACCAGATGAGCGAATCTGGGCTTGAACCAG ACACGTTTGTCCTCAACAGCATGATGCACTTGTATGGCCGGCTGGGCCAATTTGAAAAGATGGAGGAAGTTCTGACTGCAATGGAGAAGGGACCTTATGA AGCTGATATCAGTACATACAACATCTTAATCAACATATATGGACGAGCAGGATTTTTCGAGAGAATGGAAGGTATTTTCCAATCACTTCCATCCAAAAAT CTGAAACCTGATGTTGTGACTTGGACTTCAAGATTAGGAGCCTACTCTAGAAAGAAACTATACGCAAGATGCTTGGAAATCTTTGAAGAAATGATTGATG CTGGATGTCACCCTGATGGAGGAACTGCCAAAGTACTTCTATCAGCATGCTCAAGCGAAGATCAAATTGAGCAGGTTACCACTGTAATCAGAACAATGCA TAAGGGCATGGAGGCTGCTCTTCCTGCATGA
AA sequence Show only first row Show all	>Potri.012G123600.1 pacid=42782520 polypeptide=Potri.012G123600.1.p locus=Potri.012G123600 ID=Potri.012G123600.1.v4.1 annot-version=v4.1 MLLVRCTLNHIFIESRIRNGHFRRREKNSSSGDVKKWKSDRVYIDKHGKWRIFDHKKMSRKRCGSLRGQGWKYGSGFVDGIFPVLSPVAHQILNFVRKEV DPNNVWAALDTLPVTHETWDDLINVAVQLRLNKQWDPIALICQWILYKSSFQTDVMCYNLLIDAYGQKSLYKKAEETYVDLLQARCIPTEDTYALLIKAY CACGLLAKAEAAFVDMRKYGLPPSAIVYNAYIDGLMKAGNPQRAIEIFQRLKNDGCQPSTDTYTLLINLHGKASQSYMALKLFNEMRSQKCRPDICTYTA LVNAFAREGLCEKAEEIFEQMQEDKLEPDVYTYNALMEAYSRAGFPYGAAEIFSLMRHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFNEMKRLGITPTM KSHMLLLCAYSRARNVDKCEEIVNQMSESGLEPDTFVLNSMMHLYGRLGQFEKMEEVLTAMEKGPYEADISTYNILINIYGRAGFFERMEGIFQSLPSKN LKPDVVTWTSRLGAYSRKKLYARCLEIFEEMIDAGCHPDGGTAKVLLSACSSEDQIEQVTTVIRTMHKGMEAALPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35130			Tetratricopeptide repeat (TPR)...		Potri.012G123600 [exp]	0	1
AT1G35420			alpha/beta-Hydrolases superfam...		Potri.019G079000 [exp]	2.23	0.9740
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Potri.019G034000 [exp]	3.46	0.9626
					Potri.001G033500 [exp]	5.47	0.9445
AT1G27510			Protein of unknown function (D...		Potri.015G075000 [exp]	6.00	0.9618
AT1G51550			Kelch repeat-containing F-box ...		Potri.010G252200 [exp]	6.32	0.9502
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.001G249800 [exp]	9.74	0.9542
AT3G62550			Adenine nucleotide alpha hydro...		Potri.014G122000 [exp]	12.96	0.9449
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015400 [exp]	13.78	0.9483
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Potri.002G160650 [exp]	15.87	0.9436
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	17.74	0.9487

Compare expression of checked genes

Potri.012G123600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.