Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 711 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 626 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 487 / 2e-154 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 457 / 5e-143 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 449 / 5e-140 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G72180 438 / 2e-137 Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 441 / 3e-137 Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G34110 437 / 6e-136 Leucine-rich receptor-like protein kinase family protein (.1) AT4G26540 429 / 1e-132 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G65700 425 / 5e-132 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123800 [exp] 1105 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 1102 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123400 [exp] 1064 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 1040 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124400 [exp] 1027 / 0 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 1025 / 0 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 1016 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 903 / 0 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060400 [exp] 898 / 0 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002293 [exp] 767 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 735 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 727 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 723 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 619 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 611 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 602 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 573 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10031161 [exp] 560 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10000814 [exp] 440 / 2e-137 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G124100.1 pacid=42784331 polypeptide=Potri.012G124100.1.p locus=Potri.012G124100 ID=Potri.012G124100.1.v4.1 annot-version=v4.1 ATGGCATCTATGTCCAAAAAAACAGTATCCATAGCATCCCAGTATTCCTTGTTCTCCACTGCTCCTTTCTTGGTTTACTTTTTGCTTGGTTTAGCTTGTG TTTTTTCCCCTTCTTCTTTTGCTGAAGCTACTATAGGAGATCAAGTCACACAAGGATGGAAGGAAGCAGAAGCACTTCTAAAATGGAAAGCAGATCTTGA CAATCAAAGCCAGTCTCTCCTGTCCTCATGGGCCGGAGACAACCCCTGCAACTGGGAAGGAATCACTTGCGACAAGACTGGTAACATCACAAAGTTAAGT CTACAGGATTGTAGTTTGAGAGGTACGCTTCATGGTCTCCAATTCTCATCCTTTCTGAACTTGATCGAGCTTAATCTTCGGAATAACTCACTCTATGGGA CCATTCCTTCACATATCAGTAATCTTTCCAAGCTCATTGTCCTTGACTTGTCTCAAAATCAAATTTCTGGAAGCATTCCATCCGAAATAGGTTCATTGAC AAGCCTTGAGTTATTTTCTCTGATGAAAAACCTCATCAACGGTTCTATCCCGTCTAATTCTATAGGAAACCTAAGCAACTTAGTGTATCTTTATCTTAAT GACAATGACCTTTCTGGTGCCATACCACAAGAAGTTGGAAGAATGAAATCTCTCGTATTGCTTAATTTGTCAAGCAACAACCTAACTGGTGCTATTCCTT CGTCCATTGGAAACTTGAGTAACTTGGTTTATCTTGACCTTTTGAAAAACAAACTCTCTGGTTCAGTCCCTGAGGAAGTAGGAATGCTTGAGAATCTGCG TACACTTCAATTAGGAGGGAATAGTCTTGATGGTACCATCCACACTTCCATAGGAAACATGAGATCTCTCACTGTCCTTGATTTGAGAGAAAATTATCTC ACCGGTACAATACCAGCTTCTATGGGAAACTTAACAAGATCTCTTACTTTCATTGACTTGGCATTTAATAACCTGACCGGTACGATCCCTTCATCTTTAG GAAATTTGAGAAGCTTATCCTTTCTTTACCTTCCTTCAAACAATCTTTCAGGTTCTTTTCCTCTAGAGTTGAACAATCTCACACATCTGAAACATTTTTA TGTAAATTCTAATAGATTTACTGGACATTTACCAGACGACATATGTCGTGGTGGACTCCTTTCGTTGTTGTGTGTTATGGACAATGACTTCACAGGACCT ATCCCAAAAAGCTTGAGAAATTGCACTAGCTTGGTGAGACTCAGAATTGAGAGAAACCAGCTCAGTGGAAATATATCTAATGATTTGGTTGTTTATCCAA ATATGACCTACATAAATTTGAGTGATAACGAATTCTATGGTGAACTTTCTTGGAAATGGGAGCAATTTCAGAGTCTGATGACTCTAAGAGTCTCTAACAA TAGAATATCTGGTGAAATACCAGCTGAGCTTGGAAAGGCAACTCGACTGCAAGCGATTGATCTCTCTTCAAATCATCTTGTTGGGGAGATTCCTAAGGAA CTGGGAAAACTGAAGTTACTTGAACTCACTCTTAACAACAACAATCTTTCAGGTGATGTTACTTCAGTTATCGCAACGATACCTTACATTACAAAGCTTA ATTTGGCAGCAAATTATCTGAGTGGATCGATTCCCAAACAACTTGGAGAGCTCTCAAATCTATTATTCTTGAATTTCAGCAAGAATAAATTTACAGGTAA TGTTCCTCCCGAGATGGGAAATTTACGGTCTCTTCAAAGTCTTGATCTTAGTTGGAATTATCTCCAGGGATACATTCCACCGCAGCTTGGACAGTTCAAA CATCTAGAGACATTGAACATCTCCCACAACATGATGTCTGGCTCTATACCGACCACTTTTGCGGACTTGTTGAGCTTGGTGACTGTGGATATATCCTGCA ATGATTTAGAGGGCCCCGTTCCTGATATTAAAGCTTTTAGTGAGGCTCCATACGAGGCAATCAGAAACAACAACTTGTGTGGCAGTTCTGCAGGTTTAAA GCCTTGTGCTGCATCTACAGGCAATAAAACTGCTTCTAAGAAGGATAGAAAAATGGTTGTCTTATTTGTCTTCCCTCTCTTGGGACTCTTTTTTCTGTGT TTAGCCTTGATTGGAGGTTTCTTAACCCTTCACAAAATTAGAAGCAGGAGGAAAATGTTAAGGGAGGCACGACAGGAAAATCTGTTCTCAATATGGGACT GTTGTGGGGAAATGAATTATGAGAACATCATCGAGGCTACAGAGGAATTCGACTCCAACTATTGTATTGGAGCAGGAGGGTATGGAGCTGTTTACAAAGC TGTGCTGCCAACAGGAATGGTGGTTGCTGTGAAGAAATTCCACCAATCACAAGATGGTGAGATGACTGGTTCGAAAGCTTTCAGAAGTGAGATTCATGTC TTACTAAGTATAAGACACCGTAACATTGTGAAGTTGTATGGTTTCTGTTCACATAGAAAGCACTCGTTTTTGGTTTGCGAGTTCATAGAAAGGGGAAGTT TGAGAATGACTTTGAACAGTGAAGAACGAGCAAGGGAATTGGATTGGATTAAAAGGCTAAATCTTGTGAAAGGAGTGGCCAATGCTTTGTCCTACATGCA CCATGATTGCTCACCTCCTATTATTCATCGAGACATTTCGAGCAACAATGTCCTCCTGGATTCAAAATATGAAGCTCGTGTCACTGACTTTGGCACAGCT AAGCTCTTAATGCCTGAAGCGTCCAACTGGACATCAATTGCAGGAACTTATGGATACATAGCTCCAGAGTTAGCCTTCACAATGAAAGTGGATGAAAAAT GTGATGTCTACAGCTTTGGTGTGTTAACATTGGAAATAATCATGGGAAGGCATCCAGGAGATTTCATCTCAGCTTTGCTATCACCATCATCCTCGTCAAC ATCATTGCCAATGAGTCAGCATACAATCTTGAAGGACGTACTAGACCAGTGTATACCACCTCCTGAACATCGAGTTGCATCAGGTGTGGTCTATATTGCC AGACTAGCATTTGCATGCTTGTGTGCTGATCCACAGTCTCGGCCAACAATGAAACAAGTCGCTTCTGACCTCAGCATTCAATGGCCCCCATTGTCAAAGC CATTCTCCAGGATAGAATTGAAAGACGTTTTGTTACCCAGAAATTCCACAGGCTGA
AA sequence Show only first row Show all	>Potri.012G124100.1 pacid=42784331 polypeptide=Potri.012G124100.1.p locus=Potri.012G124100 ID=Potri.012G124100.1.v4.1 annot-version=v4.1 MASMSKKTVSIASQYSLFSTAPFLVYFLLGLACVFSPSSFAEATIGDQVTQGWKEAEALLKWKADLDNQSQSLLSSWAGDNPCNWEGITCDKTGNITKLS LQDCSLRGTLHGLQFSSFLNLIELNLRNNSLYGTIPSHISNLSKLIVLDLSQNQISGSIPSEIGSLTSLELFSLMKNLINGSIPSNSIGNLSNLVYLYLN DNDLSGAIPQEVGRMKSLVLLNLSSNNLTGAIPSSIGNLSNLVYLDLLKNKLSGSVPEEVGMLENLRTLQLGGNSLDGTIHTSIGNMRSLTVLDLRENYL TGTIPASMGNLTRSLTFIDLAFNNLTGTIPSSLGNLRSLSFLYLPSNNLSGSFPLELNNLTHLKHFYVNSNRFTGHLPDDICRGGLLSLLCVMDNDFTGP IPKSLRNCTSLVRLRIERNQLSGNISNDLVVYPNMTYINLSDNEFYGELSWKWEQFQSLMTLRVSNNRISGEIPAELGKATRLQAIDLSSNHLVGEIPKE LGKLKLLELTLNNNNLSGDVTSVIATIPYITKLNLAANYLSGSIPKQLGELSNLLFLNFSKNKFTGNVPPEMGNLRSLQSLDLSWNYLQGYIPPQLGQFK HLETLNISHNMMSGSIPTTFADLLSLVTVDISCNDLEGPVPDIKAFSEAPYEAIRNNNLCGSSAGLKPCAASTGNKTASKKDRKMVVLFVFPLLGLFFLC LALIGGFLTLHKIRSRRKMLREARQENLFSIWDCCGEMNYENIIEATEEFDSNYCIGAGGYGAVYKAVLPTGMVVAVKKFHQSQDGEMTGSKAFRSEIHV LLSIRHRNIVKLYGFCSHRKHSFLVCEFIERGSLRMTLNSEERARELDWIKRLNLVKGVANALSYMHHDCSPPIIHRDISSNNVLLDSKYEARVTDFGTA KLLMPEASNWTSIAGTYGYIAPELAFTMKVDEKCDVYSFGVLTLEIIMGRHPGDFISALLSPSSSSTSLPMSQHTILKDVLDQCIPPPEHRVASGVVYIA RLAFACLCADPQSRPTMKQVASDLSIQWPPLSKPFSRIELKDVLLPRNSTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124100 [exp]	0	1
AT2G31820			Ankyrin repeat family protein ...		Potri.017G006800 [exp]	4.24	0.8639
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.014G155100 [exp]	4.79	0.9103
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Potri.002G042200 [exp]	5.00	0.8692
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.014G103700 [exp]	10.39	0.8159
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.010G010100 [exp]	10.95	0.8909
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.015G026500 [exp]	15.16	0.8386
					Potri.019G071125 [exp]	15.74	0.8126
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G031251 [exp]	21.70	0.8790
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024000 [exp]	23.21	0.8634
AT2G25440		AtRLP20	receptor like protein 20 (.1)		Potri.012G007800 [exp]	24.49	0.8752

Compare expression of checked genes

Potri.012G124100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.