Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 742 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 701 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 514 / 7e-165 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 497 / 2e-158 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 496 / 6e-158 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G56040 495 / 7e-158 Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G72180 484 / 5e-155 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 491 / 1e-154 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G26540 484 / 7e-154 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 469 / 1e-147 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123800 [exp] 1186 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 1159 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 1135 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123400 [exp] 1134 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124400 [exp] 1099 / 0 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 1085 / 0 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 1026 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 979 / 0 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 966 / 0 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020935 [exp] 788 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 786 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008712 [exp] 782 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 773 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 701 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 686 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 657 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 637 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10031161 [exp] 603 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10028612 [exp] 476 / 1e-150 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G124200.1 pacid=42782595 polypeptide=Potri.012G124200.1.p locus=Potri.012G124200 ID=Potri.012G124200.1.v4.1 annot-version=v4.1 ATGGCATCAATATCCAAATCATCCCAATTTTCCTTCTTCTCCACCATAACTTTCTTGGTTTACAACCTGCTTGCTTGTGCTACCTTCATAACTTCGATTC CTGACAGTACTACTAGCGGTGCAGGATTCAAAGAAGCACAGGCCCTTCAGAAATGGAAAGCCAGTCTTGACAATGAAAGCCAATCCCTCCTGAGTTCATG GAATGGAGACACCCCTTGCAAATGGGTTGGAGTTGATTGTTACCAAGCTGGTGGCATTGCCAATTTAAGTCTTCAGAATGCAGGTTTGAGAGGTACAATT CATAGTCTTAATTTCTCGTCCTTCCCAAGCTTGATGAAGCTTAACCTCAGTAACAATTCACTCTATGGAACCATTCCTTCACAAATTAGTAACCTTTCCA GGCTCACCATCCTTGACTTGTCTTACAATGATATTTCAGGAAACATTCCATCTGAAATAAGCTTCTTAAAAAGCCTCAGAATATTTTCACTATCCAATAA TGATATGAATGGTTCCTTCCCTCCAGAAATAGGAATGATGAGTTCACTTTCCGAAATAAATTTAGAAAACAATCATCTCACGGGTTTTCTCCCTCATTCT ATAGGAAATATGAGCCACTTATCCAAATTTCTTGTATCTGCTAATAAACTCTTTGGTCCCATACCAGAGGAAGTTGGAACGATGACATCTCTTGCAGTTC TAGACCTGAACACCAACAGCCTAACCGGTGTTATTCCTAGGTCCATAGGAAACTTAACCAACTTGTTAAAACTTTGCCTTTATGAAAACAAACTCTCTGG TTCCGTTCCTGAGGAAGTAGGGAACATGAGATCTCTCCTTTACTTTTACCTATGTGATAATAATCTCAGTGGCATGATACCATCTTCTATAGGAAACTTG ACATCTCTCACTGTCCTAGACCTTGGACCTAATAATCTAACCGGTAAAGTCCCTGCTTCATTAGGAAATTTGAGAAACTTATCCCACCTTTACCTTCCAT ATAACAACCTTTTTGGTTCCTTGCCTCCAGAAATAAATAACCTTACACATTTGGAACATTTGCAAATATATTCTAATAAATTCACTGGACATCTACCCCG AGACATGTGCCTTGGGGGATCCCTTTTGTTTTTTGCTGCCTCGGGCAATTATTTTACTGGACCTATCCCAAAAAGTTTGAGAAATTGCACCAGCTTGTTG AGATTCATGCTTAACAGAAACCAAATTAGTGGAAATATATCTGAAGATTTTGGCATATACCCACATTTATACTACATGGATTTGAGTGATAATGAGCTTT ATGGTAAACTTTCATGGAAATGGGAGCAGTTCCATAATCTGACAACTCTAAAAATCTCGAGAAATAAAATCTCTGGTGAAATACCGGCTGAGCTAGGAAA GGCATCTAATCTCAAAGCACTTGATCTCTCTTCAAACCACCTAGTTGGTCAAATTCCAATTGAAGTGGGAAAGTTGAAGTTGCTTGAACTTAAGCTCAGC AATAACCGACTTTTAGGAGATATTTCTTCAGTGTTTGAAGTGTTGCCTGATGTTAAAAAACTTGACCTAGCAGCAAACAATTTAAGTGGACCAATTCCCA GACAGATTGGCATGCACTCTCAATTATTATTCTTGAATCTGAGCAAGAATAGTTTCAAAGGGATTATTCCTGCAGAGATAGGGTATTTGCGCTTTCTTCA AAGTCTTGATCTTAGTTGGAATTCTCTGATGGGAGACCTACCACAGGAGCTCGGAAACCTGCAACGGCTAGAGTCCTTGAACATTTCCCACAACATGCTG TCTGGTTTCATTCCAACCACTTTTAGTTCTATGCGAGGCATGACAACCGTGGATGTTTCCAATAATAAGTTAGAGGGTCCGATTCCTGACATCAAAGCCT TCCATGAGGCTCCATTTCAAGCAATTCACAACAATACCAACCTATGTGGCAATGCTACTGGTTTGGAGGTCTGTGAGACACTCCTAGGAAGCAGGACTTT GCATAGAAAGGGAAAAAAAGTTGTCATTTTGATTACACTCCCTCTGTTGGGATTTTTATTTTTTCTTTTCACCTTGATTGGAGGTTTCTTCATTCTCCGG CAGAGAATTAGAAGTAGACGAAAAATGTCAATGGAACGCGGAGATCTGTTCTCGATATGGGGCCATCAAGGTGAAATAAATCATGAGGACATCATTGAGG CAACAGAGGGATTCAACCCCAGCCATTGTATTGGAGCAGGAGGGTTTGCAGCTGTCTACAAAGCTGCCCTGCCAACAGGGCTAGTGGTGGCTGTGAAGAA ATTTCACCAATCACCAGATGATGAGATGATAGGTTTGAAAGCTTTTACAAGTGAGATGCATTCCTTATTGGGTATACGCCACCGAAACATCGTGAAGCTG TATGGCTTCTGTTCACATAGAAAACACTCTTTTTTGGTTTATGAATTCCTTGAAAGGGGTAGTTTGAGGACTATTCTAGACAATGAGGAACAAGCAATGG AGATGGATTGGATGAAAAGGATCAATCTTGTGAGAGGAGTGGCCAATGCTTTGTCCTACCTGCACCACAATTGCTCACCTCCGATCGTTCATCGAGATAT TTCAAGCAACAATATTCTCTTGGATTCAGAATATGAGGCTCATGTGTCCGACTTTGGCACAGCTAGGCTATTATTGCCTGACTCATCTAATTGGACCTCC CTTGCAGGTACCGCTGGGTACACAGCTCCAGAGTTGGCCTACACAATGGAAGTGAACGAAAAATGTGATGTCTATAGCTTTGGAGTGGTAGCTATGGAAA TCATGATGGGAAGGCATCCAGGCGATTTCATTTCATCCTTGTTGTCATCAGCATCCTCATCAACAACAGCGGCAACTTCTCAGAATACGCTCTTCAAGGA CATATTAGACCAGCGCCTCCCGCCTCCTGAACATCGGGTTGTAGCAGGTGTGGTCTATATTGCAGAACTAGCATTTGCTTGCTTGAATGCTGTTCCCAAA TCTAGGCCATCGATGAAACAAGTTGCTTCGGATTTCTTAATTCGATGGCCCCCATTGTCATAG
AA sequence Show only first row Show all	>Potri.012G124200.1 pacid=42782595 polypeptide=Potri.012G124200.1.p locus=Potri.012G124200 ID=Potri.012G124200.1.v4.1 annot-version=v4.1 MASISKSSQFSFFSTITFLVYNLLACATFITSIPDSTTSGAGFKEAQALQKWKASLDNESQSLLSSWNGDTPCKWVGVDCYQAGGIANLSLQNAGLRGTI HSLNFSSFPSLMKLNLSNNSLYGTIPSQISNLSRLTILDLSYNDISGNIPSEISFLKSLRIFSLSNNDMNGSFPPEIGMMSSLSEINLENNHLTGFLPHS IGNMSHLSKFLVSANKLFGPIPEEVGTMTSLAVLDLNTNSLTGVIPRSIGNLTNLLKLCLYENKLSGSVPEEVGNMRSLLYFYLCDNNLSGMIPSSIGNL TSLTVLDLGPNNLTGKVPASLGNLRNLSHLYLPYNNLFGSLPPEINNLTHLEHLQIYSNKFTGHLPRDMCLGGSLLFFAASGNYFTGPIPKSLRNCTSLL RFMLNRNQISGNISEDFGIYPHLYYMDLSDNELYGKLSWKWEQFHNLTTLKISRNKISGEIPAELGKASNLKALDLSSNHLVGQIPIEVGKLKLLELKLS NNRLLGDISSVFEVLPDVKKLDLAANNLSGPIPRQIGMHSQLLFLNLSKNSFKGIIPAEIGYLRFLQSLDLSWNSLMGDLPQELGNLQRLESLNISHNML SGFIPTTFSSMRGMTTVDVSNNKLEGPIPDIKAFHEAPFQAIHNNTNLCGNATGLEVCETLLGSRTLHRKGKKVVILITLPLLGFLFFLFTLIGGFFILR QRIRSRRKMSMERGDLFSIWGHQGEINHEDIIEATEGFNPSHCIGAGGFAAVYKAALPTGLVVAVKKFHQSPDDEMIGLKAFTSEMHSLLGIRHRNIVKL YGFCSHRKHSFLVYEFLERGSLRTILDNEEQAMEMDWMKRINLVRGVANALSYLHHNCSPPIVHRDISSNNILLDSEYEAHVSDFGTARLLLPDSSNWTS LAGTAGYTAPELAYTMEVNEKCDVYSFGVVAMEIMMGRHPGDFISSLLSSASSSTTAATSQNTLFKDILDQRLPPPEHRVVAGVVYIAELAFACLNAVPK SRPSMKQVASDFLIRWPPLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124200 [exp]	0	1
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123600 [exp]	16.61	0.8145
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.007G002600 [exp]	18.49	0.8118
AT3G28880			Ankyrin repeat family protein ...		Potri.004G129100 [exp]	21.49	0.8043
AT4G10950			SGNH hydrolase-type esterase s...		Potri.009G157800 [exp]	54.77	0.7823
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Potri.008G099900 [exp]	64.42	0.7550
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123200 [exp]	67.30	0.7741
AT2G02060	GARP		Homeodomain-like superfamily p...		Potri.011G006350 [exp]	94.67	0.7539
AT3G45850			P-loop containing nucleoside t...		Potri.014G170950 [exp]	113.41	0.7347
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Potri.019G062000 [exp]	128.34	0.7493
					Potri.009G132400 [exp]	151.49	0.7083

Compare expression of checked genes

Potri.012G124200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.