Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35110 2307 / 0 NAPP, GRL, NAP1 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G124500 [exp] 2570 / 0 AT2G35110 2139 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G123900 [exp] 1059 / 0 AT2G35110 807 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G124200 [exp] 192 / 2e-56 AT2G35110 87 / 2e-20 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G123001 [exp] 100 / 7e-25 AT2G35110 98 / 7e-25 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036217 [exp] 2423 / 0 AT2G35110 2277 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Lus10038353 [exp] 1864 / 0 AT2G35110 1796 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09735 [poplar] [flax] Nckap1 Membrane-associated apoptosis protein
Representative CDS sequence Show only first row Show all	>Potri.012G124400.6 pacid=42784231 polypeptide=Potri.012G124400.6.p locus=Potri.012G124400 ID=Potri.012G124400.6.v4.1 annot-version=v4.1 ATGGCAAAGTCGCGGCAGCATTATTCAACACACGATGCAGCTCTTTCACCCACTGGTGTAAGATCGAGGGAATGGGAGGGTCCATCGAGATGGACTGAGT ATTTGGGTCCTGATTTGAGTTCGCCAATGGCATCGAGGTTGTCTAGGAATAAGGTAGGTTCAGATGGACAGGTTCAGAGTTCGGGTGGTGGATCTCATAA GGGTTTGAATTTGCAATGGGTAGTTCAACTTACTGAAGTAGCTGAAGGTCTTATGGCGAAAATGTATAGATTGAATCAAATTTTGGATTTCCCGGATCCA GTTGGTCACTTGTTTTCAGAATCGTTTTGGAAAGCGGGTGTGTTCCCGAATTATCCGAGGATTTGCTTATTGCTTTCTAAAAAGTTTCCGGAGCATTTCA GTAAATTGCAGCTTGAAAGGGTTGACAAGGTTGCTTTGGATGCTTTGAATGATGGTGCAGAAGTTCATTTGCAGAGTTTAGAGCCTTGGGTTCAGTTACT TCTTGACCTGATGGCATTCCGAGAACAAGCTCTGCGACTCATATTGGATTTAAGTAGTACTGTTATTACCTTGTTGCCTCATCAGAACTCGCTTATACTG CATGCATTTATGGATCTCTTTTGTTCCTTTGTACGTGTTAATCTTTTATCTGAGAAGATACCAAGGAAAATGATGTTGCAAATGTATAACCTTCTGCATG CCATGTCAAGAAATGACAGAGACTGTGATTTCTATCATCGGTTGGTTCAATTTATAGATTCTTATGATCCACCATTGAAAGGGTTACAAGAAGATCTAAA TTTTGTCAGTCCACGTATTGGAGAGGTTTTAGAGGCTGTAGGCCCTATCATTTTCCTATCTACAGATACAAGGAAACTCAGAAATGAGGGATTCCTAAGT CCATATCACCCTCGGTATCCAGATATACTAACAAATTCTGCTCATCCTATGAGAGCCCAAGACCTAGCAAATGTTACTTCTTACAGGGAATGGGTGTTAC TTGGATATCTTGTTTGTCCCAATGAGCTGCTTCGTGTCACTAGCATTGATATTGCTCTGGTCGTACTGAAGGAAAATTTGATACTTGCAGTATTCAGGGA TGAGTATGTACTATTGCACGAGGATTATCAGTTATATGTTTTGCCTCAAATATTAGAGTCGAAGAAGATGGCCAAATCTGGGCGCACTAAGCAAAAGGAG GCAGATCTCGAGTACAGTGTGGCCAAGCAGGTTGAAAAAATGATAAGTGAAGTGCACGAGCAAGCACTTCTATCTTGTGATGCCATTCACCATGAGAGGA GAATATTATTAAAACAGGAAATTGGAAGAATGGTACTGTTTTTTACTGACCAGCCAAGTTTATTGGCACCAAACATCCAGATGGTATTCTCTGCCCTGGC TTTGGCACAGTCTGAGGTTATCTGGTATTTCCAACATGTAGGAATTGCATCATCAAAATCTAAAGCTTCTCGAGCAGTACCAGTTGACATAGATCCAAAT GATCCTACTATTGGCTTTTTACTTGATGGAATGGATCATCTGTGCTGTCTTGTGCGGAAGTATATTGCAGCTATCAGAGGCTATGCATTATCATACCTGT CTTCATGTGCTGGTAGAATCCGGTTTTTGCTGGGAACTCCAGGAATGGTGGCTCTTGACCTTGATGCTAGCTTAAAAGGGCTTTTCCAGCAGATTGTTAA GCATTTGGAAAACATACCAAAACTGCAGGGTGAAAATATTTCCGCCATCACATGTGATTTATCTCAGGAGTTTCGTAAAGATTGGTTGTCAATATTGATG ATTGTAACATCCGCTAGATCATCCATAAACATAAGACACCTGGAGAAAGCTACTGTATCTACTGGAAAAGAAGGATTACTGTCAGAAGGAAATGCTGCAT ACAATTGGTCCAGATGTGTTGATGAACTAGAATCTCAATTATCAAAGCATGGAAGTCTAAAGAAGCTGTATTTCTATCACCAGCATCTTACAGCAGTCTT TCGGAATACCATGTTTGGACCAGAAGGGCGTCCTCAACATTGCTGTGCATGGCTTGGTGTTGCTAGTAGCTTTCCAGAGTGTGCTTCTCCAATTGTTCCG GAAGAGGTAACTAAAATTGGGCGTGATGCAGTCCTATATGTTGAGTCTCTTATTGAATCTATCATGGGAGGATTGGAGGGATTGATCAATATTCTTGATT CCGAAGGAGGATTTGGTGCCTTAGAGACTCAGCTTCTTCCAGAGCAGGCAGCTTTTTATTTGAATAACGCATCCAGAGTTTCAATTCCTACATCAAAATC TCCCAGGGGAGCAGTTGGTTTTCCATTGCCCGGCCATGAGAGTTATCCTGAAAACAATAGTGCTATAAAAATGTTGGAAGCTGCGATGCAAAGGTTGACC AACTTGTGTTCAGTTCTGAATGATATGGAGCCTATATGTGTTCTAAACCATGTATTTGTTCTGAGGGAGTACATGAGAGAGGGCATACTTGGCAACTTCA GGAGGAGATTGCTTTCAGTATTAAAAACTGACAATGATCTTCAACGGCCTTCTGTCCTAGAGTCCTTGATTCACAGGCACCTGAGCATTGTCCATCTAGC AGAGCAACACATCAGCATGGACCTTACTCATGGTATTCGAGAAGTTCTACTAACTGAGGCCTTCTCAGGACCTGTGTCTTCTCTGCAATTGTTTGAAAAA CCAGCAGAGCAGCTTACTGGGTCAGCCACTGAAGTTGTCTGCAACTGGTATATAGATAACATTGTCAAAGATGTATCAGGTGCTGGGATCCTTTTTACAC CAATCCACAAATGCTTTAAAAGCACAAGGCCTGTCGGTGGATATTTTGCGGAATCAGTCACTGATCTCAGAGAACTACAAGCCTTTGTTCGTGTATTTGG TGGCTATGGAGTTGACAGGCTAGACAGAATGATGAAAGAACACACAGCAGCACTATTGAATTGCATTGACACATCATTACGGTCAAACCGTGAAGTGTTA GAGGCTGTTGCAGGCAGCATGCATTCTGGTGACAGAATAGAAAGAGAGGCATGCTCGAGGCAGATGGTGGACTTGGACACAGTGATTGGATTTTGCGTTG AGGGAGGACAAGCACTTGCTTTTGATCAGCTTCTTGCTGAAGCTGCTGGGGTCGTGCTTGATGAAGGTGCACCATTGATATATTCATTACTTTCTGGGGT GGTTAAGCATATACCTGAAGAAATACCTGAAAAGAAGGACATTAGAAGAATAAGAGGGGTGGCAAACAGTGTTAATATAGTTGGAGATCATGATTCTGAA TGGATCAGATCAATTTTGGAAGATGTTGGGGGTGCAAATGATGGTTCTTGGACATTGTTGCCTTATTTATTTGCCACCTTCATGACATCAAATATATGGA ATACTACTGGCTTCAATGTTGACACTGGGGGCTTCAACAATAATATCCATTGTCTGGCAAGGTGCATGAGTGCTGTGATTGCAGGAAGTGAGTTAGTGAG ATTGGAACGTGAACATCAGCAGAGACAGTCTCTCTCTAATGGTCATCTTGGTGAGGCTTTGGATCCTGAAATACATAGCCGTTTGTCTGCTGAAGCAAGT ATAAAGTCTGCAATGCAACTTTTTGTCAAATTTGCTTCTGGTATTGTGTTGGATTCTTGGAGTGAAGCTAATAGATCTCATCTTGTTGCAAAGCTGATTT TCTTGGACCAACTTTGTGAGATCTCGCCTTACCTTCCAAGAAGCTCCCTCGAAGCCTATGTTCCTTACGCAATTCTCCGCTCAGTTTATAGCCAGTACTA CATGAAATCTCCATCCATGCCTCTGGCACTACTAAGTGTCTCACCCCACCATTCACCTGCCATATCACTATCTCACGCCTCTCCTGCAGCAAAGCATCCT CGTGGGGACTCAACTCCACAGCATAGCGGCAATGACTCAGGTTTTTTTAAGGGATCATCATCCCATAGCCAGGAACACCTTTATGATATGGATAGTGGAA GCCTGCGCAGCATGGACAGTAAACATCGAAATGTTCGCCGCTCCGGGCCTTTGGATTATAGTTCAAGCAGAAAAGTTAAATTTGTTGAAGGCTCAACTTC AGGGAGCACAGGTCCGAGTCCACTACCGCGGTTTGCCGTGTCAAGATCTGGGCCGTTAATGTACAAGTAG
AA sequence Show only first row Show all	>Potri.012G124400.6 pacid=42784231 polypeptide=Potri.012G124400.6.p locus=Potri.012G124400 ID=Potri.012G124400.6.v4.1 annot-version=v4.1 MAKSRQHYSTHDAALSPTGVRSREWEGPSRWTEYLGPDLSSPMASRLSRNKVGSDGQVQSSGGGSHKGLNLQWVVQLTEVAEGLMAKMYRLNQILDFPDP VGHLFSESFWKAGVFPNYPRICLLLSKKFPEHFSKLQLERVDKVALDALNDGAEVHLQSLEPWVQLLLDLMAFREQALRLILDLSSTVITLLPHQNSLIL HAFMDLFCSFVRVNLLSEKIPRKMMLQMYNLLHAMSRNDRDCDFYHRLVQFIDSYDPPLKGLQEDLNFVSPRIGEVLEAVGPIIFLSTDTRKLRNEGFLS PYHPRYPDILTNSAHPMRAQDLANVTSYREWVLLGYLVCPNELLRVTSIDIALVVLKENLILAVFRDEYVLLHEDYQLYVLPQILESKKMAKSGRTKQKE ADLEYSVAKQVEKMISEVHEQALLSCDAIHHERRILLKQEIGRMVLFFTDQPSLLAPNIQMVFSALALAQSEVIWYFQHVGIASSKSKASRAVPVDIDPN DPTIGFLLDGMDHLCCLVRKYIAAIRGYALSYLSSCAGRIRFLLGTPGMVALDLDASLKGLFQQIVKHLENIPKLQGENISAITCDLSQEFRKDWLSILM IVTSARSSINIRHLEKATVSTGKEGLLSEGNAAYNWSRCVDELESQLSKHGSLKKLYFYHQHLTAVFRNTMFGPEGRPQHCCAWLGVASSFPECASPIVP EEVTKIGRDAVLYVESLIESIMGGLEGLINILDSEGGFGALETQLLPEQAAFYLNNASRVSIPTSKSPRGAVGFPLPGHESYPENNSAIKMLEAAMQRLT NLCSVLNDMEPICVLNHVFVLREYMREGILGNFRRRLLSVLKTDNDLQRPSVLESLIHRHLSIVHLAEQHISMDLTHGIREVLLTEAFSGPVSSLQLFEK PAEQLTGSATEVVCNWYIDNIVKDVSGAGILFTPIHKCFKSTRPVGGYFAESVTDLRELQAFVRVFGGYGVDRLDRMMKEHTAALLNCIDTSLRSNREVL EAVAGSMHSGDRIEREACSRQMVDLDTVIGFCVEGGQALAFDQLLAEAAGVVLDEGAPLIYSLLSGVVKHIPEEIPEKKDIRRIRGVANSVNIVGDHDSE WIRSILEDVGGANDGSWTLLPYLFATFMTSNIWNTTGFNVDTGGFNNNIHCLARCMSAVIAGSELVRLEREHQQRQSLSNGHLGEALDPEIHSRLSAEAS IKSAMQLFVKFASGIVLDSWSEANRSHLVAKLIFLDQLCEISPYLPRSSLEAYVPYAILRSVYSQYYMKSPSMPLALLSVSPHHSPAISLSHASPAAKHP RGDSTPQHSGNDSGFFKGSSSHSQEHLYDMDSGSLRSMDSKHRNVRRSGPLDYSSSRKVKFVEGSTSGSTGPSPLPRFAVSRSGPLMYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.012G124400 [exp]	0	1
AT1G13940			Plant protein of unknown funct...		Potri.008G092800 [exp]	1.41	0.7740
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.001G467000 [exp]	4.79	0.7755
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Potri.018G107600 [exp]	10.09	0.7465
AT1G48840			Plant protein of unknown funct...		Potri.012G055800 [exp]	14.83	0.6869
AT5G51410			LUC7 N_terminus domain-contain...		Potri.003G109000 [exp]	16.00	0.7322
AT5G02520			unknown protein		Potri.004G077400 [exp]	25.23	0.6997
AT3G04240		SEC	secret agent, Tetratricopeptid...		Potri.013G051400 [exp]	25.29	0.6935	SEC.1
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.012G071900 [exp]	27.49	0.6821
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.001G056100 [exp]	30.96	0.7167
AT1G78070			Transducin/WD40 repeat-like su...		Potri.005G168600 [exp]	32.32	0.6556

Compare expression of checked genes

Potri.012G124400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.