Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35100 604 / 0 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 551 / 0 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT1G67410 281 / 6e-90 Exostosin family protein (.1) AT1G74680 263 / 1e-82 Exostosin family protein (.1) AT3G45400 262 / 3e-82 exostosin family protein (.1) AT3G03650 246 / 1e-75 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT5G16890 243 / 3e-74 Exostosin family protein (.1) AT1G34270 230 / 8e-70 Exostosin family protein (.1) AT5G11130 102 / 5e-23 Exostosin family protein (.1) AT5G61840 95 / 6e-21 GUT1, IRX10-L Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G124800 [exp] 833 / 0 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.008G034500 [exp] 265 / 7e-84 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.019G044600 [exp] 265 / 1e-82 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.013G067400 [exp] 261 / 3e-81 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.002G210000 [exp] 255 / 2e-79 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 253 / 2e-78 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.013G116200 [exp] 247 / 2e-76 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 241 / 3e-74 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 91 / 5e-22 AT3G45400 145 / 5e-43 exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038355 [exp] 649 / 0 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10036219 [exp] 648 / 0 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10015791 [exp] 276 / 1e-87 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 274 / 8e-87 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 264 / 1e-82 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 257 / 1e-79 AT3G45400 622 / 0.0 exostosin family protein (.1) Lus10031610 [exp] 254 / 7e-79 AT1G34270 685 / 0.0 Exostosin family protein (.1) Lus10039145 [exp] 254 / 1e-78 AT5G16890 679 / 0.0 Exostosin family protein (.1) Lus10002060 [exp] 253 / 2e-78 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10013627 [exp] 247 / 4e-78 AT3G45400 524 / 0.0 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.012G124600.1 pacid=42783958 polypeptide=Potri.012G124600.1.p locus=Potri.012G124600 ID=Potri.012G124600.1.v4.1 annot-version=v4.1 ATGATCGCGAAATTATTAAAAACCAGAAACCCTAAATCCCCAAATTCCAGCAAATTTCCCCAAATTATGACGCGAAAATCCTCTCTGTTAAAACAAACCC TAATTTTATCCGCCTTCACAGTCCTCATCATCTACGTCTCCTTCAACACCTTCCTCAGCTACTTCACCACCACGGCCACTGCTGGTGTCTCCGCCACAAC TACATCATTCTTCGCCAAGCAGATTTCCAGGGAGAATTTCCAAGAATTTCCCGTGAAAGCAACGGGAAATGAGAGGAAAGTTAGGGTATTCATGCACGAT CTGCCCAAGAAGTTCACAACAGGAATCATCGAGAATCACGGGCTGGCGCGTGGCTATTCTAACTTGTCTAAGGTGAGTTACCCCGGTCACCAACACATGG GTGAATGGTACTTGTATTCGGATCTTTCCCGACCCGAATCGGACCGAGTTGGATCACCTGTGGTCAAAGTAAATGACCCGGAGGAGGCTGACTTGTTTTA TGTTCCGGTCTTTTCTTCTCTCAGTTTGACAGTGAATCCAGTTCAGGTCGGGAAAGTGCCCGTTTCGGATCCGGTTTATAGTGATGAGAAGATGCAAGAC GAGCTGGTAGAGTGGTTAGAGAAGCAGGAGTATTGGAGGAGGAATAATGGAAGGGATCATGTGCTTTTTGCTGGGGATCCGAATGCCCTTTATCGGGTCT TGGACCGGGTCAAGAATGCGGTTCTGTTGCTGTCGGATTTCGGGCGGGTTAGAAGTGATCAAGGGTCCTTAGTCAAGGATGTCATCGTGCCTTACGCGCA TAGGATTAATGTTTATAATGGTGATATTGGTGTGGATGAGAGAAAAACGCTCTTGTTTTTCATGGGCAATCGGTACAGGAAAGATGGTGGAAAAATTCGT GATATGCTTTTTCAATTGCTTGAGAAAGAAGAGGATGTTTTAATAAGTCATGGGACACAATCTAGGGAAAGTCGGCGCACAGCAACGCTTGGCATGCATA CTTCAAAGTTCTGTTTGAATCCTGCCGGCGATACCCCATCAGCTTGCCGTCTTTTTGATTCCATTGTTAGCTTGTGTGTGCCGTTGATAGTCAGTGATAG TATTGAGTTACCATTCGAAGATGTCATAGACTACAGAAAGATAGCAATTTTTGTGGATACTGAGTCGTCTCTAAAGCCAGGATATCTAGTTAAATTGCTG AGAGCAGTATCCACAGAAAGAATACTGGAATATCAGAAAGAGATGAGAGAGGTGAAACGATATTTTGAATACAGCGATCCAAATGGAACTGTGAATGAAA TTTGGCGGGAAATAGGACAAAAACTGCCTCTTATTCAACTGATGATCAATCGTGAGAAACGGCTTGTTAAGAGGGATTCTATCGAACCAGACTGTTCTTG TCTGTGTACAAATCAGAGTACACTTTTCACCTCGTTGTGA
AA sequence Show only first row Show all	>Potri.012G124600.1 pacid=42783958 polypeptide=Potri.012G124600.1.p locus=Potri.012G124600 ID=Potri.012G124600.1.v4.1 annot-version=v4.1 MIAKLLKTRNPKSPNSSKFPQIMTRKSSLLKQTLILSAFTVLIIYVSFNTFLSYFTTTATAGVSATTTSFFAKQISRENFQEFPVKATGNERKVRVFMHD LPKKFTTGIIENHGLARGYSNLSKVSYPGHQHMGEWYLYSDLSRPESDRVGSPVVKVNDPEEADLFYVPVFSSLSLTVNPVQVGKVPVSDPVYSDEKMQD ELVEWLEKQEYWRRNNGRDHVLFAGDPNALYRVLDRVKNAVLLLSDFGRVRSDQGSLVKDVIVPYAHRINVYNGDIGVDERKTLLFFMGNRYRKDGGKIR DMLFQLLEKEEDVLISHGTQSRESRRTATLGMHTSKFCLNPAGDTPSACRLFDSIVSLCVPLIVSDSIELPFEDVIDYRKIAIFVDTESSLKPGYLVKLL RAVSTERILEYQKEMREVKRYFEYSDPNGTVNEIWREIGQKLPLIQLMINREKRLVKRDSIEPDCSCLCTNQSTLFTSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Potri.012G124600 [exp]	0	1
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G005000 [exp]	2.23	0.8425
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Potri.007G144600 [exp]	3.46	0.8379
AT1G66920			Protein kinase superfamily pro...		Potri.007G126200 [exp]	4.69	0.8029
AT1G31130			unknown protein		Potri.015G125600 [exp]	5.19	0.8222
AT3G07550			RNI-like superfamily protein (...		Potri.017G056400 [exp]	13.60	0.7764
AT1G50940		ETFALPHA	electron transfer flavoprotein...		Potri.011G135600 [exp]	16.88	0.7869
AT2G14110			Haloacid dehalogenase-like hyd...		Potri.017G043700 [exp]	17.94	0.7847
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Potri.001G294400 [exp]	18.16	0.7805
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Potri.007G006500 [exp]	20.12	0.7587
AT2G18630			Protein of unknown function (D...		Potri.005G127401 [exp]	23.66	0.7410

Compare expression of checked genes

Potri.012G124600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.