Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32650 734 / 0 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT5G46240 469 / 7e-158 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT2G26650 462 / 5e-153 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G18290 434 / 3e-144 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32500 439 / 1e-143 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT2G25600 438 / 2e-143 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G22200 415 / 2e-135 AKT3, AKT2/3 potassium transport 2/3 (.1) AT3G02850 281 / 3e-84 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 273 / 2e-81 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT1G01340 77 / 1e-14 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G245000 [exp] 1179 / 0 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 1023 / 0 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G071400 [exp] 479 / 3e-159 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G249900 [exp] 476 / 6e-158 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G031600 [exp] 467 / 2e-154 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.004G132200 [exp] 461 / 6e-154 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.003G018800 [exp] 425 / 8e-139 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.017G135400 [exp] 276 / 2e-82 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 275 / 7e-82 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037904 [exp] 816 / 0 AT4G32650 706 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Lus10007670 [exp] 814 / 0 AT4G32650 724 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Lus10028128 [exp] 462 / 2e-154 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10043298 [exp] 462 / 7e-153 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10042831 [exp] 457 / 2e-152 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10019442 [exp] 460 / 4e-152 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 459 / 2e-151 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 440 / 3e-144 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10015474 [exp] 436 / 9e-143 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1) Lus10019944 [exp] 434 / 1e-142 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein CL0030 [poplar] [flax] PF11834 [poplar] [flax] KHA KHA, dimerisation domain of potassium ion channel
Representative CDS sequence Show only first row Show all	>Potri.012G124944.1 pacid=42784000 polypeptide=Potri.012G124944.1.p locus=Potri.012G124944 ID=Potri.012G124944.1.v4.1 annot-version=v4.1 ATGTCATCGTCAGAAACGAGGTCACCGTTGTCATTACTGTTTCGAAGACGGTCGAGTGGAGATGTCACTAAGAATTTAGCCTCAGTTTCAAGCAGCCTTT TACCAGCTTTTGGAATTGATGTTGATGATGGTTACTTGCACCTGAAGAAATATGTTATTGCTCCTTATGATAGAAGATACCGGTGGTGGCAAACGTTCCT TGTGGTGTTGGTGGTGTACTCAGCATGGGCATCTCCTTTTGAGCTTGCATTTAAGAAAGCGGCTACCGGAGGATTTCTGCCCGTCGATTTGGTGGTTGAT GCCTTCTTTGCCGCCGATATTGTCCTAACTTTCTTTGTTGCTTATTTGGACAATACAACCTTTCTTCTTGTGGATGATCACAAGAAAATTGCACTACGGT ATATCGCTAGGTTATTGTTCCCTATGGACGCAGCCTCGACTCTGCCATTCCACATCATACACAGAATCTTTACTGGCAAAATGCACGAAGGAAAGGTCTT CGGTTTTCTCAATCTGCTGGAGAAAAACACACGCTTCAGCTATTTCTGGACAAGATTATTTAAACTTACCAGTGTTACACTATTTGTGGTTCACTCGGCA GGATGTATCTACTACTGGATTGCTGTCCATCATGACACAGAAGGTAATACTTGGATTGGAAAGCACGTTGAAGATTTCGAACAAAGAAGCATCTGGTTGG GCTACACGTATTCCATTTATTGGTCCATTGTTACCCTAACCACTGTCGGCTACGGAGACTTGCATGCAGAAAACACGGGAGAGAAGGTTTTTAACATGTT TTACATGCTATTCAACATTGGCCTCACAACTTATATAATCGGAAACATGACGAACCTTGTTGTCCGTTCCGCAGTTCATACTTCTGCTATGAGGAATGCC ATCGATCAGATATTAAGATATGCAAGCAAGAATAGACTCCCAGAAGGATTGAGAAAGCAAATGCTAGCACACATGCAACTCAAGTTCAAGACAGCAGAGT TGCAGCAAGAGGAGGTGTTGGAGAACTTACCAAAAGCAATCAGATCTAGCATTGCTCAACATCTTTTCCATAGCATCGTTGCAAAAACCTACCTTTTCAA AGGAGTATCTGCAGACCTTATTACCCAGTTGGTATCAGAAATGAAAGCAGAATATTTTCCTCCTAAGGTTGAAATTATTTTACAAAACGAGATTCCGACA GAGTTTTACGTCTTAGTAACTGGAGCAGTGGACGTGCTGGTGTCCAGGAATGGAACAGAGCAGGTTTTGTCAAAACTAGTATCTTCAGACATGGCAGGGG AAATTGGGGTTGTATTCAACATCCCACAGCCTTTTACAGTGAGGACCAGGAGGCTTTCCCAGGTCATCCGGCTCAGTCATCATCATCTCAAGCAAATGGC GCAGCCCCATAGCGAAGATGGAAAAAAAATTATCTCCAACTTCATCCAGTACCTAAAGGATTTGAAACGAGAGATGCAAGAAGAAATACCCTTTCTCAGG GAATTGCTGGAAGACACAGCTGTGGAGAAAGCAACATCAAATGAGGGGTTACAAAGTTCTGAGGCACTAAATTCTCAAAGAGAAACAAGTGTAGAAGGAA TACAAGAAAATTCTACTCCATTGCCAAGCACATTTCCCAAAAGAGTGATAATCCATGGGCATCATCCAAACGAAACAACAGGAGATACAATGGGGAAACT CATAAATTTTCCTGACTCAACAGAAAATCTATTCGACATAGCAGAAAAGAAGTTTGGCAAGCATGGAAACAAAATTCTTATGGAGGATGGCTCAGAAGTA GAAGAATTGGATGCTTTAAGGGAGAATGATCACTTGTTTATTTTTTAA
AA sequence Show only first row Show all	>Potri.012G124944.1 pacid=42784000 polypeptide=Potri.012G124944.1.p locus=Potri.012G124944 ID=Potri.012G124944.1.v4.1 annot-version=v4.1 MSSSETRSPLSLLFRRRSSGDVTKNLASVSSSLLPAFGIDVDDGYLHLKKYVIAPYDRRYRWWQTFLVVLVVYSAWASPFELAFKKAATGGFLPVDLVVD AFFAADIVLTFFVAYLDNTTFLLVDDHKKIALRYIARLLFPMDAASTLPFHIIHRIFTGKMHEGKVFGFLNLLEKNTRFSYFWTRLFKLTSVTLFVVHSA GCIYYWIAVHHDTEGNTWIGKHVEDFEQRSIWLGYTYSIYWSIVTLTTVGYGDLHAENTGEKVFNMFYMLFNIGLTTYIIGNMTNLVVRSAVHTSAMRNA IDQILRYASKNRLPEGLRKQMLAHMQLKFKTAELQQEEVLENLPKAIRSSIAQHLFHSIVAKTYLFKGVSADLITQLVSEMKAEYFPPKVEIILQNEIPT EFYVLVTGAVDVLVSRNGTEQVLSKLVSSDMAGEIGVVFNIPQPFTVRTRRLSQVIRLSHHHLKQMAQPHSEDGKKIISNFIQYLKDLKREMQEEIPFLR ELLEDTAVEKATSNEGLQSSEALNSQRETSVEGIQENSTPLPSTFPKRVIIHGHHPNETTGDTMGKLINFPDSTENLFDIAEKKFGKHGNKILMEDGSEV EELDALRENDHLFIF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Potri.012G124944 [exp]	0	1
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Potri.006G245000 [exp]	3.16	0.7041	Pt-ATKC1.4
					Potri.010G154250 [exp]	88.43	0.4592
AT2G33980		ATNUDT22	nudix hydrolase homolog 22 (.1...		Potri.004G053300 [exp]	273.46	0.4118

Compare expression of checked genes

Potri.012G124944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.