Plant FIBer expression Database

Potri.012G125200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G125200.1 pacid=42783895 polypeptide=Potri.012G125200.1.p locus=Potri.012G125200 ID=Potri.012G125200.1.v4.1 annot-version=v4.1
ATGACTCACAGATTCAACAATTATAAAAAACGACGATCACTACAGGTAACAGGAAACCGAAGAAGACGAACATGGGTTCGTTATCTCGAAATGGAGGAAT
CCTCCAGCAGTTTTCCGGAAATATTCAATGCAAAAAAAAGCACCCTTTGTGTGCACAACGCAGAAATTGAAATCACAAGTGATAAATGTCTTATAAGGGG
TCAAGCAGCATTTCTGGGCGAGGACTGCCCCAGGGGGATATCAATACGGTCGTTCTCAGAAAATGGTGTAAAATGCACCGATTTTGTTATTCCACGAGAA
GTCCATGTGGTTGAGGCTGCCACCCGTCGTGTTGCTCACCGTGCCACCAGTCCTCGACATTCCGACTCCTCCTTCCAGCACAATCCGAAAAAGCCCCACA
AAAAGAAGCAGAGTAAGCAGGCATCCCTGGAGTAG
AA sequence
>Potri.012G125200.1 pacid=42783895 polypeptide=Potri.012G125200.1.p locus=Potri.012G125200 ID=Potri.012G125200.1.v4.1 annot-version=v4.1
MTHRFNNYKKRRSLQVTGNRRRRTWVRYLEMEESSSSFPEIFNAKKSTLCVHNAEIEITSDKCLIRGQAAFLGEDCPRGISIRSFSENGVKCTDFVIPRE
VHVVEAATRRVAHRATSPRHSDSSFQHNPKKPHKKKQSKQASLE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G125200
[exp]
0 1
AT2G23260 UGT84B1 UDP-glucosyl transferase 84B1 ... Potri.009G095500
[exp]
1.73 0.7913 ZOG1.18
AT5G13920 GRF zinc finger / Zinc knuckle... Potri.009G112676
[exp]
4.89 0.7703
AT5G28490 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPEND... Potri.013G046500
[exp]
5.00 0.7563
AT4G36490 ATSFH12 SEC14-like 12 (.1) Potri.005G119700
[exp]
7.93 0.7370
Potri.002G049650
[exp]
8.48 0.7560
AT3G11050 ATFER2 ferritin 2 (.1) Potri.008G072700
[exp]
9.94 0.7284 PFE2.2
AT4G08950 EXO EXORDIUM, Phosphate-responsive... Potri.002G098700
[exp]
11.22 0.7052
AT5G07050 nodulin MtN21 /EamA-like trans... Potri.006G033500
[exp]
11.61 0.7614
AT3G21760 HYR1 HYPOSTATIN RESISTANCE 1, UDP-G... Potri.016G015700
[exp]
18.70 0.7499
AT3G16520 UGT88A1 UDP-glucosyl transferase 88A1 ... Potri.015G027800
[exp]
19.79 0.7375

Potri.012G125200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.