Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14120 363 / 2e-120 DRP3B dynamin related protein (.1.2.3) AT4G33650 350 / 2e-115 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT5G42080 190 / 1e-57 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT1G14830 188 / 3e-55 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 187 / 6e-55 ADL1D DYNAMIN-like 1D (.1.2.3) AT3G61760 186 / 1e-54 ADL1B DYNAMIN-like 1B (.1) AT3G60190 186 / 3e-54 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT1G60500 109 / 1e-26 DRP4C Dynamin related protein 4C (.1) AT1G60530 96 / 6e-23 DRP4A Dynamin related protein 4A (.1) AT1G10290 46 / 2e-05 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118300 [exp] 427 / 8e-145 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.017G041800 [exp] 425 / 3e-144 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.003G141000 [exp] 202 / 2e-60 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.001G090600 [exp] 201 / 3e-60 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 197 / 2e-58 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G147500 [exp] 186 / 1e-54 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 185 / 4e-54 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 181 / 1e-52 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 178 / 1e-51 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019875 [exp] 389 / 3e-130 AT4G33650 1030 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027906 [exp] 388 / 1e-129 AT4G33650 1080 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10012076 [exp] 384 / 2e-128 AT4G33650 1045 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10014041 [exp] 382 / 2e-127 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10002407 [exp] 380 / 1e-126 AT4G33650 1079 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10003873 [exp] 195 / 1e-57 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10023073 [exp] 189 / 2e-55 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10040117 [exp] 190 / 3e-55 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10004007 [exp] 186 / 2e-54 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10001820 [exp] 184 / 2e-53 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00350 [poplar] [flax] Dynamin_N Dynamin family CL0023 [poplar] [flax] PF01031 [poplar] [flax] Dynamin_M Dynamin central region
Representative CDS sequence Show only first row Show all	>Potri.012G125300.2 pacid=42784087 polypeptide=Potri.012G125302.1.p locus=Potri.012G125300 ID=Potri.012G125300.2.v4.1 annot-version=v4.1 ATGGCGGAGGAGCCAGCATCACCGTCGCTAGCATCGGCGCCGCCGCTAGGATCATCGGTGATACCGATAGTTAACAAGTTACAAGATATATTTGCTCATT TAGGTAGTCAATCGACGATTGAGTTACCGCAAGTGGCAGTTGTAGGCAGTCAAAGCAGTGGTGACGGTAGTGGTGAAGATGAGTGGGGAGAGTTTCTGCA TTTGCCTGGGAAACGGTTTTATGATTTTTCCGAGATCCGGAACGAAATTCAGGCTGAGACTGCTAAGGAAGCAGGAGGCAACAAAGGTGTCTCTGACAAG CAAATTCGTTTGAAGATTTTTTCACCAAATGTTCTTGATATTACACTTGTCGATCTACCTGGTATAACAAAGGTTCCTGTGGGTGATCAACCCTCCGATA TTGAAGCACGAATTAGAACTATGATCATGTCATATATTAAAAAACCAAGCTGTCTGATTCTAGCTGTTACAGCAGCAAATTCAGATTTAGCAAACTCAGA TGCTCTTCAGATTGCAGGAAATGCAGATCCTGATGGTAAAACCATTGGAATAATCACGAAGTTGGACATTATGGACAGAGGCACTGATGCTCGTAATCTT TTGCTTGGAAAAGTGATTCCCCTTAGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAGAGGATATCATACTCAATCGGAGCATCAACGATGCACTTG CTGCGGAGGAGTTGTTCTTCCGTAGTCGTCCAGTATATAATGGTCTAGCTGATCGCTGTGGCGTTCCTCAGCTGGCGAAGAAGCTGAATCAGGTAGAATT TTTGCAGCATTATTTACTTTCAGAATACCTTAAGGTACATCATTTCAAAGTAGATTGCCACTGCTAA
AA sequence Show only first row Show all	>Potri.012G125300.2 pacid=42784087 polypeptide=Potri.012G125302.1.p locus=Potri.012G125300 ID=Potri.012G125300.2.v4.1 annot-version=v4.1 MAEEPASPSLASAPPLGSSVIPIVNKLQDIFAHLGSQSTIELPQVAVVGSQSSGDGSGEDEWGEFLHLPGKRFYDFSEIRNEIQAETAKEAGGNKGVSDK QIRLKIFSPNVLDITLVDLPGITKVPVGDQPSDIEARIRTMIMSYIKKPSCLILAVTAANSDLANSDALQIAGNADPDGKTIGIITKLDIMDRGTDARNL LLGKVIPLRLGYVGVVNRSQEDIILNRSINDALAAEELFFRSRPVYNGLADRCGVPQLAKKLNQVEFLQHYLLSEYLKVHHFKVDCHC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14120		DRP3B	dynamin related protein (.1.2....		Potri.012G125300 [exp]	0	1
AT2G40980			Protein kinase superfamily pro...		Potri.008G083300 [exp]	6.00	0.7599
AT5G01030			Protein of unknown function (D...		Potri.006G093600 [exp]	6.32	0.7295
AT4G27640			ARM repeat superfamily protein...		Potri.008G085800 [exp]	9.00	0.7596
AT1G67690			Zincin-like metalloproteases f...		Potri.010G054466 [exp]	22.04	0.7351
AT1G79210			N-terminal nucleophile aminohy...		Potri.012G123100 [exp]	23.91	0.7592
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.011G108800 [exp]	37.41	0.6942
AT2G36200			P-loop containing nucleoside t...		Potri.006G210700 [exp]	39.15	0.7479
AT2G15730			P-loop containing nucleoside t...		Potri.004G143300 [exp]	48.00	0.6965
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	48.57	0.7455	DMT901,Pt-MET1.2
AT3G58610			ketol-acid reductoisomerase (....		Potri.014G055100 [exp]	48.78	0.7198

Compare expression of checked genes

Potri.012G125300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.