Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23260 181 / 8e-57 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G20240 145 / 2e-43 MADS PI, PISTILLATA PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) AT3G57230 139 / 1e-40 MADS AGL16 AGAMOUS-like 16 (.1.2) AT1G24260 132 / 1e-37 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G09960 130 / 4e-37 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G37940 130 / 5e-37 MADS AGL21 AGAMOUS-like 21 (.1) AT3G58780 129 / 3e-36 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G15800 128 / 3e-36 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT4G18960 128 / 6e-36 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT2G45660 126 / 1e-35 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G125501 [exp] 372 / 8e-132 AT5G23260 192 / 6e-61 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.007G073000 [exp] 192 / 2e-61 AT5G23260 256 / 3e-86 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.005G182200 [exp] 152 / 5e-46 AT5G20240 244 / 2e-82 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.002G079000 [exp] 141 / 2e-41 AT5G20240 238 / 2e-80 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.015G134800 [exp] 140 / 2e-40 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.005G150501 [exp] 136 / 5e-39 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2) Potri.002G109601 [exp] 134 / 1e-38 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.009G079000 [exp] 134 / 2e-38 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.012G132600 [exp] 133 / 2e-38 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010184 [exp] 179 / 7e-56 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10017388 [exp] 177 / 4e-55 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10029719 [exp] 140 / 5e-41 AT5G20240 221 / 3e-73 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10042749 [exp] 136 / 2e-39 AT5G20240 219 / 2e-72 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10006715 [exp] 132 / 1e-37 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10007983 [exp] 132 / 1e-37 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10021140 [exp] 132 / 2e-37 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10004638 [exp] 128 / 3e-36 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10005080 [exp] 127 / 2e-35 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10005302 [exp] 127 / 2e-35 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.012G125600.1 pacid=42783574 polypeptide=Potri.012G125600.1.p locus=Potri.012G125600 ID=Potri.012G125600.1.v4.1 annot-version=v4.1 ATGGGAAGAGGAAAGATAGCAATAACTAGGATTGAGAACCGCACAGCCAGGCAAGTCACATTTTCCAAACGCAGAGGAGGGCTTTTCAAGAAGACCCATG AGCTCTCTGTGCTCTGTGATGCTGAAATAGGACTCATCATCTTCTCGAGCAATGGGAAGCTTTATGAATTCTGCAATGAGTCGTCCAGCATACCACACAT CATCAGAAGGTATGAGATTTCAAAAGGAATGCGTGTTCTAGAAAGCAATGACTGGGAACAAATTCAGAAGGAATCGAAAAGAATCAGGAAAGAGACGGAT GATCTTCAGTTGAGTGTTCGATGCTACAAAGGCGAAAACCTGAGTTCCTTGCACCATGAGGGTTTGGTCGAACTTGAAAAGCAGCTAGAGTGCTCGGTTA ACAAGGTTCGAGCTCAGAAGCTTGAGCTTTTGCAACAGCAGGTGGACAATCTGCGAAGAAAGGAGAAAATGTTGGAGGAGGAAAATCAACAAATACAGTA CCATCTGCATCATGTTGCAATGTTGGAGCAACAACAGGCAGCTGCAGCAATGGTGAAGCCAATGGAACAACAACGAATGCTCGAGCAGTTTCAGTTTTCT GATGAAGATCAGCCAATTAGTAGTCTACTTCAGCTTGCTCCACTCCCTCCACAGTTCCAGCCTTACCGTGTCCAGCCTACACAGCCTAACCTTCAAGATT TCAGTCTCTCCATCCCTGATCCCTCCAACTATATATGA
AA sequence Show only first row Show all	>Potri.012G125600.1 pacid=42783574 polypeptide=Potri.012G125600.1.p locus=Potri.012G125600 ID=Potri.012G125600.1.v4.1 annot-version=v4.1 MGRGKIAITRIENRTARQVTFSKRRGGLFKKTHELSVLCDAEIGLIIFSSNGKLYEFCNESSSIPHIIRRYEISKGMRVLESNDWEQIQKESKRIRKETD DLQLSVRCYKGENLSSLHHEGLVELEKQLECSVNKVRAQKLELLQQQVDNLRRKEKMLEEENQQIQYHLHHVAMLEQQQAAAAMVKPMEQQRMLEQFQFS DEDQPISSLLQLAPLPPQFQPYRVQPTQPNLQDFSLSIPDPSNYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.012G125600 [exp]	0	1
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Potri.004G128800 [exp]	4.69	0.5804
AT2G23940			Protein of unknown function (D...		Potri.006G179600 [exp]	7.48	0.5340
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.002G038100 [exp]	9.53	0.5527	Pt-GY4.1
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Potri.003G194100 [exp]	15.09	0.4726	ATCHX1.2
AT1G10740			alpha/beta-Hydrolases superfam...		Potri.004G029200 [exp]	52.72	0.4668

Compare expression of checked genes

Potri.012G125600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.