Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44860 396 / 3e-139 unknown protein AT4G19950 383 / 7e-134 unknown protein AT1G31130 350 / 6e-121 unknown protein AT1G26650 60 / 5e-10 unknown protein AT1G69430 60 / 6e-10 unknown protein AT4G16850 47 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G125600 [exp] 495 / 2e-178 AT1G31130 327 / 7e-112 unknown protein Potri.007G105600 [exp] 191 / 3e-58 AT4G19950 179 / 7e-54 unknown protein Potri.005G186200 [exp] 186 / 2e-56 AT4G19950 185 / 3e-56 unknown protein Potri.007G105700 [exp] 178 / 1e-53 AT4G19950 182 / 4e-55 unknown protein Potri.005G184600 [exp] 120 / 1e-31 AT4G19950 133 / 3e-36 unknown protein Potri.002G074200 [exp] 119 / 6e-31 AT1G31130 128 / 3e-34 unknown protein Potri.008G091500 [exp] 66 / 7e-12 AT1G26650 401 / 3e-140 unknown protein Potri.010G163400 [exp] 57 / 4e-09 AT1G26650 453 / 1e-160 unknown protein Potri.010G250300 [exp] 49 / 2e-06 AT1G31130 70 / 2e-13 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018322 [exp] 365 / 2e-126 AT4G19950 417 / 3e-147 unknown protein Lus10017130 [exp] 340 / 7e-117 AT4G19950 410 / 1e-144 unknown protein Lus10036220 [exp] 220 / 3e-71 AT5G44860 265 / 3e-89 unknown protein Lus10038358 [exp] 185 / 4e-59 AT4G19950 183 / 1e-58 unknown protein Lus10018940 [exp] 170 / 4e-50 AT1G31130 231 / 8e-74 unknown protein Lus10028643 [exp] 162 / 4e-47 AT1G31130 228 / 1e-72 unknown protein Lus10036796 [exp] 66 / 6e-12 AT1G69430 434 / 4e-153 unknown protein Lus10037135 [exp] 64 / 3e-11 AT1G69430 431 / 8e-152 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G125800.1 pacid=42783333 polypeptide=Potri.012G125800.1.p locus=Potri.012G125800 ID=Potri.012G125800.1.v4.1 annot-version=v4.1 ATGGATCTTGCAACAGAAGAGCTACAATTCTTGACGATACCAGAAATCTTAAAGGAATCTACTTCAATCCCAAAACAATCACCAAAAACTTTTCAGCTAA TCACCGTTGCTTTAATCTTTCCTTTATCTTTTGCAAGCTTGGCGCATTCTCTTTTTACCCATCCTCTATTGGACCAAATTCAAGATCACCCATCAAGCCA AAACACTCGTCAATGGACCCTTCTTTTGGTTTTTCAATTCTTTTATTTAATCTTTTTGTTTGCCTTCTCTCTTCTATCAACTGCTGCTGTTGTTTTCACT GTTGCTTCTCTTTACACTTCAAAGCCTGTTTCTTTTTCCTCTACCACGTCTGCTATCCCTCAAGTTTTTAAGCGTTTGTTTATCACTTTCTTGTGGGTTT GTTTGTTGATGTTGGTTTATAATTCTGTTTTCTTGCTCTTCTTGGTGATTTTGATTGTTGGTATTGATATTCAGAACACTCTCTTGGTTTTGTTCTCCTT GATGGTGATTGGTGTGCTTTTCTTGGTTGTTCATGTTTATATAACTGCACTTTGGCATTTGGCTAGTGTGGTTTCTGTCTTGGAGCCAGTTTATGGTCTT GTTGCTATGAAAAAGAGTTACGAGTTGTTGAAAGGGAAGATTCGAGTGGCCGGTGTTCTTGTTTTTGGGTATTTGTCTATTTGTGGATCGGTTTCTGTGG TTTTTGCAACTGTTGTGGTTCATGGTGGAGATAAATATGGAGTGTTTACAAGGATTGTTGTTGGTGGTTTCTTGGTTGGGGCTTTGGTGATTGTGAATTT GGTGGGATTGTTGGTGCAAAGTGTGTTTTATTATGTTTGCAAGAGTTATCATCATCAAGGGATTGATAAGACTGCCTTACATGAGCATCTTGGTGGGTAT CTTGGAGAGTATGTGCCTTTGAAAAGCAGCATTCAGATGGAGAACTTGGATGCCTGA
AA sequence Show only first row Show all	>Potri.012G125800.1 pacid=42783333 polypeptide=Potri.012G125800.1.p locus=Potri.012G125800 ID=Potri.012G125800.1.v4.1 annot-version=v4.1 MDLATEELQFLTIPEILKESTSIPKQSPKTFQLITVALIFPLSFASLAHSLFTHPLLDQIQDHPSSQNTRQWTLLLVFQFFYLIFLFAFSLLSTAAVVFT VASLYTSKPVSFSSTTSAIPQVFKRLFITFLWVCLLMLVYNSVFLLFLVILIVGIDIQNTLLVLFSLMVIGVLFLVVHVYITALWHLASVVSVLEPVYGL VAMKKSYELLKGKIRVAGVLVFGYLSICGSVSVVFATVVVHGGDKYGVFTRIVVGGFLVGALVIVNLVGLLVQSVFYYVCKSYHHQGIDKTALHEHLGGY LGEYVPLKSSIQMENLDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44860			unknown protein		Potri.012G125800 [exp]	0	1
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.006G000300 [exp]	3.74	0.8721	RAB11.6
AT4G01400			unknown protein		Potri.002G179600 [exp]	8.88	0.8789
AT3G61660			unknown protein		Potri.002G168300 [exp]	10.95	0.8644
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Potri.016G054200 [exp]	13.74	0.8513	Pt-AGK2.2
AT2G14045			unknown protein		Potri.019G014100 [exp]	15.19	0.8692
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.002G062700 [exp]	16.12	0.8243	PAB3.1
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Potri.001G138400 [exp]	21.21	0.8247
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.014G161600 [exp]	23.02	0.8620
AT1G07060			unknown protein		Potri.001G281500 [exp]	24.81	0.7804
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.004G111000 [exp]	27.16	0.8566

Compare expression of checked genes

Potri.012G125800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.