Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12800 421 / 9e-150 SDRB, DECR short-chain dehydrogenase-reductase B (.1) AT2G07640 183 / 6e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 108 / 8e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29260 108 / 2e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G17845 105 / 3e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G62610 104 / 3e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT3G05260 97 / 3e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G05530 96 / 3e-23 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT5G06060 96 / 4e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 94 / 4e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G025400 [exp] 429 / 8e-153 AT3G12800 427 / 3e-152 short-chain dehydrogenase-reductase B (.1) Potri.006G089700 [exp] 106 / 4e-27 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 104 / 3e-26 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G026000 [exp] 102 / 1e-25 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039500 [exp] 102 / 1e-25 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 102 / 3e-25 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G236700 [exp] 97 / 4e-23 AT3G26760 342 / 2e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 96 / 2e-22 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 94 / 2e-22 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018323 [exp] 464 / 3e-166 AT3G12800 395 / 4e-139 short-chain dehydrogenase-reductase B (.1) Lus10017129 [exp] 459 / 1e-164 AT3G12800 391 / 7e-138 short-chain dehydrogenase-reductase B (.1) Lus10031746 [exp] 436 / 2e-155 AT3G12800 463 / 4e-166 short-chain dehydrogenase-reductase B (.1) Lus10031170 [exp] 435 / 5e-155 AT3G12800 454 / 8e-163 short-chain dehydrogenase-reductase B (.1) Lus10001560 [exp] 108 / 1e-26 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019777 [exp] 103 / 1e-25 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 101 / 4e-25 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020019 [exp] 100 / 9e-25 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10016354 [exp] 100 / 3e-24 AT1G52340 389 / 4e-137 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015542 [exp] 99 / 5e-24 AT4G05530 385 / 2e-136 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.012G125900.1 pacid=42782983 polypeptide=Potri.012G125900.1.p locus=Potri.012G125900 ID=Potri.012G125900.1.v4.1 annot-version=v4.1 ATGGTAGAGTCACCATTCAAGCCAGAGATACTAAGAGGGAAGGTAGCTTTATTGACAGGAGGTGGGTCAGGAATCGGGTATGAGATATCTCTACAGCTTG GCAAACATGGAGCATCTATTGCCATCATGGGTCGACGTAAACATGTTGTTGACTCTGCTGTTTCCTCTCTTAACTCGCTTGGAATTCCTGCAATAGGATT CGAGGGAGATGTTCGCAAGAGAGAAGATGCAATTAGAGTCGTGGAATCTACTTTCAAGCATTTTGGTAGGCTTGACATTCTTGTAAATGCTGCAGCTGGC AATTTTCTTGTTCCTTCCGAGGATTTATCCTCCAATGGATTCAGGACAGTAATGGATATAGACTCTGTTGGCACTTTCACAATGTGCCATGAAGCACTCA AGTATCTAAAGAAAGGGGGACTTGGGAAGGATCCATCTACCGCTGGCGGAACGATAATAAACATAAGTGCGACTCTGCATTATACAGCAACATGGTATCA AATCCATGTATCTGCTGCTAAGGCAGCAGTTGATAGCATTACAAGAAACTTGGCATTGGAGTGGGGAACAGATTATGATATCAGAGTTAATGGGATTGCT CCAGGTCCTATTGGAGACACTGCAGGCATGAGTAAACTTGGACTTGAAGGGATATTGAGCAAAGCTATGGAGAAGATGCCTCTGTTTAAAGTGGGAGAGA AATGGGATATAGCCATGGCTGCTGTCTATCTTGCATCTGATGCAGGAAAATATGTCAATGGAACAACATTGGTTGTTGATGGGGGTGAATGGCTGAGCAA ACCTCGTCATTTTCCTAAAGACGCAGTGAAGCAACTGTCCCGAGTGGTGGAGAAGAGGTCCAAACACGCACCGGCTGGAATTCCTCGGAGTAAGCTATAA
AA sequence Show only first row Show all	>Potri.012G125900.1 pacid=42782983 polypeptide=Potri.012G125900.1.p locus=Potri.012G125900 ID=Potri.012G125900.1.v4.1 annot-version=v4.1 MVESPFKPEILRGKVALLTGGGSGIGYEISLQLGKHGASIAIMGRRKHVVDSAVSSLNSLGIPAIGFEGDVRKREDAIRVVESTFKHFGRLDILVNAAAG NFLVPSEDLSSNGFRTVMDIDSVGTFTMCHEALKYLKKGGLGKDPSTAGGTIINISATLHYTATWYQIHVSAAKAAVDSITRNLALEWGTDYDIRVNGIA PGPIGDTAGMSKLGLEGILSKAMEKMPLFKVGEKWDIAMAAVYLASDAGKYVNGTTLVVDGGEWLSKPRHFPKDAVKQLSRVVEKRSKHAPAGIPRSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Potri.012G125900 [exp]	0	1
AT3G57280			Transmembrane proteins 14C (.1...		Potri.003G094300 [exp]	3.00	0.8782
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Potri.011G114300 [exp]	8.54	0.8950
AT2G18630			Protein of unknown function (D...		Potri.005G127300 [exp]	23.36	0.8292
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Potri.006G173600 [exp]	36.37	0.8635
AT4G35640		ATSERAT3;2	serine acetyltransferase 3;2 (...		Potri.005G099700 [exp]	38.10	0.8415	SAT.4
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016900 [exp]	39.11	0.8676
AT2G16800			high-affinity nickel-transport...		Potri.009G135600 [exp]	43.08	0.8563
AT5G03905			Iron-sulphur cluster biosynthe...		Potri.006G084300 [exp]	52.96	0.8356
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.018G070400 [exp]	61.43	0.8544
AT3G48030			hypoxia-responsive family prot...		Potri.012G078000 [exp]	69.41	0.8307

Compare expression of checked genes

Potri.012G125900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.