Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PME.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45220 637 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 534 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 531 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 530 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 436 / 1e-147 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 432 / 1e-146 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 418 / 2e-142 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT4G02320 407 / 2e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 405 / 9e-136 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G14310 402 / 1e-134 ATPME3 pectin methylesterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127700 [exp] 909 / 0 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 672 / 0 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 670 / 0 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 663 / 0 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127800 [exp] 565 / 0 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 545 / 0 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 543 / 0 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 479 / 2e-164 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 459 / 2e-157 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038917 [exp] 674 / 0 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 642 / 0 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 630 / 0 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 595 / 0 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 496 / 1e-171 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 489 / 5e-169 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031720 [exp] 486 / 1e-167 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 478 / 7e-165 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027204 [exp] 483 / 1e-164 AT5G51490 560 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038918 [exp] 455 / 1e-156 AT5G51490 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.012G126800.1 pacid=42783505 polypeptide=Potri.012G126800.1.p locus=Potri.012G126800 ID=Potri.012G126800.1.v4.1 annot-version=v4.1 ATGGCCACAAAGCTTTTTATATCTCTTTTGTTCATATGCTTTTGCTCATTGCTTTCATCCTCTGTTGCCTCTAATCATGATCATGATCAGATAGATTATT GGTGCAACAAAACCCCAAACCCTGAACCATGCAAATACTTCATGAAGCAGAACCCAAAACACTTTGTACCTCAGCAAAAATCTGACTTTCGTAAACTGGC AATCGAATTATCCATGCAACGTGCTCATACTGCTCTAAGTCACAACAAAGGGTTAGGGTCAAAATGCCGCAATGAGAAAGAGAGGGCTGCATGGGCTGAC TGCTTAAGTCTCTATGAGGACACCATTGTTGAACTCAACCACACCCTCGACTCCCACACAAAATGCACCGATTTTGATGCTCAAACTTGGCTTAGCACTG CTTTAACCAATCTTGAAACTTGCAAAGCAGGGTTCAAGGATTTTGGGGTTTCAGATTTCATGCTGCCTCTCATGTCTAACAATGTTTCAAAGCTAATTCG CAACTCCTTGGCTTTAAAAGACAATGCCTCGTCAAATCCTCCTCAAACTTATAATGATGGTTTTCCAAGTTGGGTTAAACCAGGTGATAGAAAGCTCTTG CTGGCATCTTCATCAACTTCAAATCTTGTGGTGGCTCAAGATGGTTCAGGGAATCACCGCACCATAAAGGCAGCACTCGACGCGGCAGCCAAGAGAAGTG GGAGTGGGAGGTTTGTTATTCGTATTAAGAGTGGGGTTTATAGAGAAAATCTTGATATTGGCAAGAACTTAAAGAATATTATGCTTGTTGGTGATGGTTT GAAAAATACCATCATCACCGGTAGTCGAAGTGTTGGAGGAGGTTCTACTACTTTCAATTCTGCAACTGTTGCCGTGACTGGGGGTGGATTCATTGCTCGT GGTATCACATTCCGCAACACAGCTGGTCCACAAAACCACCAGGCTGTGGCCCTCCGATCAGGCGCTGATCTCTCAGTCTTCTACCGCTGCGGCTTCGAAG GTTACCAAGACACCTTGTATGTCCACTCTCAAAGGCAATTCTACAAGGAATGCGACATCTATGGCACTGTAGATTTCATCTTTGGAAATGCAGCTGTGGT CTTACAAAACTGCATGATATATGCAAGAAGGCCAATGGATAAGCAAAAGAACGTAGTAACAGCTCAAGGCAGGACTGACGCTAATCAAAATACAGGGATT TCAATCCATAATTCAAGAGTCATGGCTTCATCGGACCTTAGACCAGTGCTTAGCTCATTCAAAACTTTCTTAGGAAGGCCATGGAAGGAGTACTCCCGTA CAGTTTTTCTTCAAACTTATCTTGATTCTTTGGTGGATGCAGCAGGTTGGCTGGAGTGGGATGGTAATTTTGCTCTAAACACTTTGTATTATGGAGAGTA CAGAAATTCTGGTCCTGGAGCTTCCACTAGTGGAAGAGTTAAATGGCGTGGTTACAGGGTTATAACAAGTGCAACCGAAGCATCAAGATTCACAGTTGCA AACTTCATAGCTGGAAGGTCATGGTTGCCAGCTACCGGTGTCCCATTTTCCTCTGGACTTTAA
AA sequence Show only first row Show all	>Potri.012G126800.1 pacid=42783505 polypeptide=Potri.012G126800.1.p locus=Potri.012G126800 ID=Potri.012G126800.1.v4.1 annot-version=v4.1 MATKLFISLLFICFCSLLSSSVASNHDHDQIDYWCNKTPNPEPCKYFMKQNPKHFVPQQKSDFRKLAIELSMQRAHTALSHNKGLGSKCRNEKERAAWAD CLSLYEDTIVELNHTLDSHTKCTDFDAQTWLSTALTNLETCKAGFKDFGVSDFMLPLMSNNVSKLIRNSLALKDNASSNPPQTYNDGFPSWVKPGDRKLL LASSSTSNLVVAQDGSGNHRTIKAALDAAAKRSGSGRFVIRIKSGVYRENLDIGKNLKNIMLVGDGLKNTIITGSRSVGGGSTTFNSATVAVTGGGFIAR GITFRNTAGPQNHQAVALRSGADLSVFYRCGFEGYQDTLYVHSQRQFYKECDIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDANQNTGI SIHNSRVMASSDLRPVLSSFKTFLGRPWKEYSRTVFLQTYLDSLVDAAGWLEWDGNFALNTLYYGEYRNSGPGASTSGRVKWRGYRVITSATEASRFTVA NFIAGRSWLPATGVPFSSGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45220			Plant invertase/pectin methyle...		Potri.012G126800 [exp]	0	1	Pt-PME.6
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166400 [exp]	10.14	0.9240
					Potri.005G081100 [exp]	12.48	0.9230
AT4G04745			unknown protein		Potri.004G016800 [exp]	13.49	0.9232
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.002G080400 [exp]	19.28	0.9140
AT5G14650			Pectin lyase-like superfamily ...		Potri.001G346800 [exp]	21.63	0.9219
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G001401 [exp]	22.58	0.9175
AT3G10720			Plant invertase/pectin methyle...		Potri.010G247700 [exp]	25.00	0.8514
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.004G208700 [exp]	29.84	0.9123
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Potri.002G052100 [exp]	32.66	0.9123	CPS.1
AT1G12100			Bifunctional inhibitor/lipid-t...		Potri.001G121800 [exp]	33.61	0.9123

Compare expression of checked genes

Potri.012G126800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.