Plant FIBer expression Database

Potri.012G127000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G050900
[exp]
139 / 6e-45 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027352
[exp]
0 / 1 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15159 PIG-Y Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Representative CDS sequence
>Potri.012G127000.1 pacid=42783413 polypeptide=Potri.012G127000.1.p locus=Potri.012G127000 ID=Potri.012G127000.1.v4.1 annot-version=v4.1
ATGGGATTCAGCAAAACGGCAACGTTTAGTGGATGGTTGCTTATCTTGATCGGTTCCGTTTCTTTTGTGGGATTTCTATCTGCGGCAGTAATATCAAAGC
TTCTTCCATTATCGGACAGTCCTATCATCTCTGCTATTCAAAACGACAGGTATTACTGCTTCTTGGTACCCTTGACACTTCCTATCCTGATCATTGCTGT
GTATTCTCATTGGCTAAGCATGAAGCTGTTCAAACATGCATAA
AA sequence
>Potri.012G127000.1 pacid=42783413 polypeptide=Potri.012G127000.1.p locus=Potri.012G127000 ID=Potri.012G127000.1.v4.1 annot-version=v4.1
MGFSKTATFSGWLLILIGSVSFVGFLSAAVISKLLPLSDSPIISAIQNDRYYCFLVPLTLPILIIAVYSHWLSMKLFKHA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G127000
[exp]
0 1
AT5G14240 Thioredoxin superfamily protei... Potri.017G066200
[exp]
1.73 0.7867
AT3G07568 unknown protein Potri.014G197400
[exp]
2.44 0.7786
AT1G18700 DNAJ heat shock N-terminal dom... Potri.004G102875
[exp]
2.64 0.7442
Potri.015G107925
[exp]
2.82 0.7816
AT5G08040 TOM5 mitochondrial import receptor ... Potri.015G058500
[exp]
3.87 0.7501
Potri.007G119351
[exp]
4.00 0.7672
AT3G01130 unknown protein Potri.009G125832
[exp]
5.47 0.7378
AT4G29010 AIM1 ABNORMAL INFLORESCENCE MERISTE... Potri.018G082900
[exp]
8.00 0.7436
AT5G09310 unknown protein Potri.007G106200
[exp]
16.00 0.7050
AT3G19553 Amino acid permease family pro... Potri.009G090300
[exp]
16.06 0.6743 PtrLAT7

Potri.012G127000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.