Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51510 130 / 7e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027200 [exp] 151 / 6e-45 AT5G51510 127 / 2e-35 unknown protein Lus10038916 [exp] 116 / 4e-33 AT5G51510 81 / 2e-19 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07086 [poplar] [flax] Jagunal Jagunal, ER re-organisation during oogenesis
Representative CDS sequence Show only first row Show all	>Potri.012G127100.1 pacid=42784354 polypeptide=Potri.012G127100.1.p locus=Potri.012G127100 ID=Potri.012G127100.1.v4.1 annot-version=v4.1 ATGCAGCAGAGAAAAGCCGGGAGGCCATCTGGAACCGACGGTTCTGATTTCTCCTACCGCATGGTGGTTGATTCACGTTACACAAAGGTTGCTAAAGGGA AGTCTCGTCTCAAAGCTCTAATCTTTATTCAGGGTATCTTTCAATTGATAGAATTATTATATGTGGTTTTACCAATCTCAAAGGGGAAGGATCCAAACAT ACTTGCTGTTTCATCTTCTGTCATTGGGTTGATTTCTCTTCTAATTGGGGAATTAGGCCGAAGGCGCAGCCGAGCAGGTTTCTTGAGATTTTACCTGGCC ATGTCAACTATCGCAGTGCTTCTATCTATATTTTGTGCTGTTAGTAGCAGTTCAACATTAGAGGTTATTCAGAATCCAGCTGAATGGGAAACACAAAAGT TTGAACTTATTGAGACTTCTGTTCTTTTACTCGGATTGCTGGTGCAGATGTTCACGATCGGCACTGTAATTTCCCTCATCAGTAACATGTCTCCTCCAAA GAAAGCTTCTTAA
AA sequence Show only first row Show all	>Potri.012G127100.1 pacid=42784354 polypeptide=Potri.012G127100.1.p locus=Potri.012G127100 ID=Potri.012G127100.1.v4.1 annot-version=v4.1 MQQRKAGRPSGTDGSDFSYRMVVDSRYTKVAKGKSRLKALIFIQGIFQLIELLYVVLPISKGKDPNILAVSSSVIGLISLLIGELGRRRSRAGFLRFYLA MSTIAVLLSIFCAVSSSSTLEVIQNPAEWETQKFELIETSVLLLGLLVQMFTIGTVISLISNMSPPKKAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51510			unknown protein		Potri.012G127100 [exp]	0	1
AT1G32210		ATDAD1	DEFENDER AGAINST APOPTOTIC DEA...		Potri.003G096800 [exp]	2.00	0.9244	Pt-DAD1.1
AT5G11900			Translation initiation factor ...		Potri.018G052900 [exp]	7.93	0.8888
AT1G43890		ATRAB-C1, RAB18...	RAB GTPASE HOMOLOG 18-1, ARABI...		Potri.005G063500 [exp]	10.24	0.8951	RAB1.8
AT3G44330			unknown protein		Potri.004G198200 [exp]	10.77	0.9134
AT5G19050			alpha/beta-Hydrolases superfam...		Potri.008G202300 [exp]	11.40	0.9123
AT2G43640			Signal recognition particle, S...		Potri.013G125200 [exp]	12.96	0.9085
AT1G60970			SNARE-like superfamily protein...		Potri.003G043200 [exp]	14.69	0.9155
AT5G48580		FKBP15-2	FK506- and rapamycin-binding p...		Potri.002G248200 [exp]	20.24	0.9001
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Potri.010G066700 [exp]	21.35	0.8626
AT5G50460			secE/sec61-gamma protein trans...		Potri.015G097300 [exp]	21.54	0.8717	SEC61.2

Compare expression of checked genes

Potri.012G127100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.