Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37880 469 / 1e-165 LisH/CRA/RING-U-box domains-containing protein (.1) AT2G22690 446 / 1e-156 zinc ion binding (.1.2) AT5G09630 353 / 5e-120 LisH/CRA/RING-U-box domains-containing protein (.1) AT3G55070 112 / 1e-27 LisH/CRA/RING-U-box domains-containing protein (.1.2) AT1G06060 47 / 6e-06 LisH and RanBPM domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128600 [exp] 712 / 0 AT4G37880 486 / 3e-172 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.009G080500 [exp] 482 / 1e-170 AT4G37880 419 / 3e-146 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.001G286300 [exp] 476 / 2e-168 AT5G09630 417 / 3e-145 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.008G047300 [exp] 117 / 5e-29 AT3G55070 605 / 0.0 LisH/CRA/RING-U-box domains-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019837 [exp] 499 / 2e-178 AT4G37880 399 / 9e-139 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10014078 [exp] 491 / 4e-175 AT2G22690 382 / 2e-132 zinc ion binding (.1.2) Lus10002832 [exp] 479 / 8e-170 AT4G37880 407 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10027883 [exp] 478 / 5e-169 AT4G37880 405 / 2e-140 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10020487 [exp] 407 / 2e-141 AT4G37880 361 / 2e-123 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10007106 [exp] 159 / 5e-45 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10030305 [exp] 117 / 2e-28 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10001973 [exp] 117 / 3e-28 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10607 [poplar] [flax] CLTH CTLH/CRA C-terminal to LisH motif domain CL0229 [poplar] [flax] RING PF13445 [poplar] [flax] zf-RING_UBOX RING-type zinc-finger
Representative CDS sequence Show only first row Show all	>Potri.012G127300.2 pacid=42784351 polypeptide=Potri.012G127300.2.p locus=Potri.012G127300 ID=Potri.012G127300.2.v4.1 annot-version=v4.1 ATGGATCTGAATCCCATCAAGGACGCATTTGATCGTGTTGCAAAGAAGCAAAAGATGTCTGGTTCTAAAACACACGAAGTTGTTGACCAGATGATGCGAG ATATTGAGAAGTCATTGGAAATTATGAAGGCGGAACAATCTGGTTCTGAAGTGGACTTTAAAAATGTCCTTGGTGAACTTAAGAAAAAGTTGCAAGAAAG TGCTCCACTTGGTGATCAGATGGAAGGCACACAGAAGGAACTGAATATAGCCCTGAGCAAGTACCCAAAGCAGCTTGAGAAATCTTTCAACCCAGTTATA TCCAAGGCTTATAGAAACATTGATTTTGATGCTCACACTGTTAACCAGGTAATTGCAGGCCATTTCTATCGGCAAGGCCTGTTTGATGTTGGTGACTGCT TTATAAATGAGGCCAAGGAACCAGAATCTACTGCTGATATGAAATCTCTTTTCTCAGAAATGTATCTGATACTTGAAGCTATGAAGAACCGAAATCTAGA GCCTGCACTAAACTGGGCTGCTGCCAATTCCAATAAGCTCAAAGAAAACGGGTCAGACCTGCTGCTGAAACTTCATTGTTTACAGTTTGTGGAAATACTG CAAGGTGGAAGTAGAAGCAAAGCTCTTTCATATGTCAGAACTCACATTTCTCCTTTTGGTTCCAACCATTTTTCTGAAATCCAGAAGCTTATGTCCTGTC TCCTGTGGTCTGGAAGGCTTCATCAATCTCCTTATTCTGATTTGCTATCGCCCACTAATTGGAATGTGGTTGCTGAGGATCTTACAAGGCAGTTTTGCAA TCTCTTGGGGCAGTCTTTTGAAAGCCCATTGAGTGTGACAATAGCAGCAGGGTTCCAGGGTCTGCCACCACTTTTGAAGTTTATGACTGTGATGGCAGGG AAGAAAAATGAGTGGCGGTCAATGAAACAGTTGCCAGTGCCAGTGCCAGTGGAGTTGGGAAGGGAATTTCAGTTCCATTCCATCTTTGTATGTCCTGTGT CCAAGGAACAATCAACTGAGGAAAACCCTCCTATGTTAATGTCATGTAGCCATGTGCTATGCAAGCAGTCTATCGACAAGATGTCAAAGAATGGCTCAAA AACCTTTAAATGCCCTTACTGCCCATCTGACATCGAATCAACACAGTGCAGGCAGTTGCATTTCTGA
AA sequence Show only first row Show all	>Potri.012G127300.2 pacid=42784351 polypeptide=Potri.012G127300.2.p locus=Potri.012G127300 ID=Potri.012G127300.2.v4.1 annot-version=v4.1 MDLNPIKDAFDRVAKKQKMSGSKTHEVVDQMMRDIEKSLEIMKAEQSGSEVDFKNVLGELKKKLQESAPLGDQMEGTQKELNIALSKYPKQLEKSFNPVI SKAYRNIDFDAHTVNQVIAGHFYRQGLFDVGDCFINEAKEPESTADMKSLFSEMYLILEAMKNRNLEPALNWAAANSNKLKENGSDLLLKLHCLQFVEIL QGGSRSKALSYVRTHISPFGSNHFSEIQKLMSCLLWSGRLHQSPYSDLLSPTNWNVVAEDLTRQFCNLLGQSFESPLSVTIAAGFQGLPPLLKFMTVMAG KKNEWRSMKQLPVPVPVELGREFQFHSIFVCPVSKEQSTEENPPMLMSCSHVLCKQSIDKMSKNGSKTFKCPYCPSDIESTQCRQLHF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.012G127300 [exp]	0	1
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Potri.004G092900 [exp]	1.73	0.6798
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Potri.001G327300 [exp]	2.00	0.7231
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Potri.002G170100 [exp]	4.89	0.6196
AT3G27310		PUX1	plant UBX domain-containing pr...		Potri.001G264500 [exp]	5.00	0.6527
AT1G23780			F-box family protein (.1)		Potri.005G109700 [exp]	6.48	0.6385
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Potri.017G139700 [exp]	6.78	0.6917
					Potri.002G093800 [exp]	10.39	0.6702
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Potri.001G167200 [exp]	11.22	0.6485
AT5G51570			SPFH/Band 7/PHB domain-contain...		Potri.015G130600 [exp]	19.36	0.5751
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Potri.009G125200 [exp]	25.49	0.5727

Compare expression of checked genes

Potri.012G127300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.