Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51545 59 / 5e-11 LPA2 low psii accumulation2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G129600 [exp] 85 / 1e-20 AT5G51545 118 / 1e-33 low psii accumulation2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031131 [exp] 61 / 2e-11 AT5G51545 146 / 1e-44 low psii accumulation2 (.1) Lus10031710 [exp] 54 / 5e-09 AT5G51545 163 / 3e-51 low psii accumulation2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G128000.2 pacid=42783471 polypeptide=Potri.012G128000.2.p locus=Potri.012G128000 ID=Potri.012G128000.2.v4.1 annot-version=v4.1 ATGGCGCTACAGATCCACCCATGCATCCCTATCTTCTTCTCTCTTCAAAAAAAACCTTCCCATCGTCTCCTTCTCTTGCCATTAAGAAAACCCACCAAAC TCAAAATCAAAGCCAAAAACCCCACTAGTAATCCAACCCCACCTAATAAAAAACCCACCGCAGTCTCCCCTGGTCGAGGGTTTGGCTCACAATCATCTAC AGCAGCAACTTCAAGCAAAACAAGTGGGAGTTGGAGTAAAAAGAAACGAAAACGTAATAGAAGAGGGAGAGCATCGATAGTTTGGAGGACTCCAGTTGAG AAGCCAGGATTTATAAGACAAGAATATGAGGCTACATTTAAAGAAATGAGTAGAAATGAGAATGCTTTTATTCTTGCCTGGATAGCACTTGGTGGGATCA TTCTTGTGGAGGACCTTGTGCTTGCTGCTTCAGGTAAGTCAAAAAAAAAAATTAAGATTTTAGTTTGCATGAGTCTATACCCATCTTTCATCCCTATAGT TGGCTTGTTTGTGGCGGGAACGGTTGCATGTGGAGTTTTGAAGAATCTGCAGAATGAGAATGTTGAAGACCTAAAATGA
AA sequence Show only first row Show all	>Potri.012G128000.2 pacid=42783471 polypeptide=Potri.012G128000.2.p locus=Potri.012G128000 ID=Potri.012G128000.2.v4.1 annot-version=v4.1 MALQIHPCIPIFFSLQKKPSHRLLLLPLRKPTKLKIKAKNPTSNPTPPNKKPTAVSPGRGFGSQSSTAATSSKTSGSWSKKKRKRNRRGRASIVWRTPVE KPGFIRQEYEATFKEMSRNENAFILAWIALGGIILVEDLVLAASGKSKKKIKILVCMSLYPSFIPIVGLFVAGTVACGVLKNLQNENVEDLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51545		LPA2	low psii accumulation2 (.1)		Potri.012G128000 [exp]	0	1
AT3G21770			Peroxidase superfamily protein...		Potri.014G135580 [exp]	4.47	0.8664
AT1G79680		ATWAKL10	WALL ASSOCIATED KINASE (WAK)-L...		Potri.018G148498 [exp]	18.43	0.8544
					Potri.006G011600 [exp]	29.06	0.8420
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.016G050400 [exp]	34.20	0.8135
AT3G44610			Protein kinase superfamily pro...		Potri.008G024000 [exp]	38.07	0.8511
AT5G66330			Leucine-rich repeat (LRR) fami...		Potri.007G016800 [exp]	38.72	0.8316
AT1G03820			unknown protein		Potri.007G137001 [exp]	42.98	0.8440
AT1G20070			unknown protein		Potri.005G241800 [exp]	45.09	0.8460
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.015G122700 [exp]	49.11	0.8440
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123200 [exp]	50.47	0.8074

Compare expression of checked genes

Potri.012G128000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.