Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51550 521 / 0 EXL3 EXORDIUM like 3 (.1) AT2G17230 372 / 1e-128 EXL5 EXORDIUM like 5 (.1) AT2G35150 332 / 2e-113 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) AT4G08950 155 / 1e-44 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT5G64260 154 / 2e-44 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT1G35140 154 / 3e-44 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT5G09440 137 / 4e-38 EXL4 EXORDIUM like 4 (.1) AT3G02970 82 / 3e-17 EXL6 EXORDIUM like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G129700 [exp] 595 / 0 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.009G167800 [exp] 384 / 2e-133 AT2G17230 499 / 1e-178 EXORDIUM like 5 (.1) Potri.004G206600 [exp] 376 / 2e-130 AT2G17230 481 / 4e-171 EXORDIUM like 5 (.1) Potri.015G122100 [exp] 336 / 1e-114 AT2G35150 377 / 3e-131 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Potri.002G098600 [exp] 167 / 3e-49 AT4G08950 404 / 4e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163000 [exp] 166 / 5e-49 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1) Potri.005G163500 [exp] 159 / 4e-46 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.002G098800 [exp] 158 / 9e-46 AT4G08950 430 / 1e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163700 [exp] 158 / 9e-46 AT4G08950 431 / 4e-153 EXORDIUM, Phosphate-responsive 1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031130 [exp] 525 / 0 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10031709 [exp] 368 / 1e-128 AT5G51550 377 / 2e-132 EXORDIUM like 3 (.1) Lus10013834 [exp] 365 / 8e-126 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1) Lus10026548 [exp] 359 / 1e-123 AT2G17230 499 / 2e-178 EXORDIUM like 5 (.1) Lus10018314 [exp] 328 / 1e-111 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10017138 [exp] 217 / 6e-70 AT2G35150 240 / 9e-80 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10021370 [exp] 156 / 7e-45 AT4G08950 403 / 1e-141 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10017050 [exp] 156 / 1e-44 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10010352 [exp] 134 / 2e-36 AT5G64260 378 / 2e-132 EXORDIUM like 2 (.1) Lus10013789 [exp] 124 / 7e-33 AT5G64260 203 / 1e-63 EXORDIUM like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [poplar] [flax] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Potri.012G128100.1 pacid=42783606 polypeptide=Potri.012G128100.1.p locus=Potri.012G128100 ID=Potri.012G128100.1.v4.1 annot-version=v4.1 ATGGCACCAAGCACATCTCATGCTTCAGTGCTCCTCATCGCCACCATACTTGCCCTGCTCCTTGCCGCCACGCCCATCACTTGCTGGCGTCCATGGCCTC ACCTAAAACCCAACAGCTCAGACCTTCTTTATGATTCCTCCAAAAAATTTGAAGGGTCATCAGAATTTGTTCACCTGCGTTATCACATGGGCCCAGTCCT GACCGGGAACATAACAGTCCACACAATCTGGTACGGTAGATGGGAAAAATCCCAGAAAAAGATTATTCGAGAGTTCATCAACTCAATCTCAACCGTCAAT GCACGGCCACCGTCAGTTTCTGGGTGGTGGAGAACTGTGCAACTCTACACAGACCAAACTGGAGCCAACATCTCACATACTGTCCAATTAGGACAGGAAA AAAACGACAGGTTTTATTCTCACGGGAAGTCTTTAACGAGGTTGTCTATACAGTCGGTGATCAAGAGTGCCGTCACGGCCAAATCTAAGCCGCTGCCCAC CAACCCGAAGAACGGTTTGTATCTGTTGTTGACTTCCGATGACGTGTACGTTCAGGATTTTTGCGGGCAGGTTTGTGGGTTTCATTATTTTACATTTCCG TCGATCGTAGGGTACACGTTGCCTTATGCTTGGGTAGGTAACAGTGAAAAGCTGTGTCCTGGTGTGTGCGCTTATCCGTTTTCCGTGCCTAAGTATATAC CTGGGTTGAAGGCACTAAAGTCACCGAACGGTGATGTGGGTGTTGATGGGATGATAAGTGTGATTGCTCATGAGATTGCGGAGCTGGCGACCAATCCATT GGTGAATGCTTGGTATGCAGGACAGGACCCAAGTTTTCCCGTGGAAATAGCTGATTTGTGTGAGGGTATTTATGGAACTGGAGGCGGTGGGTCCTATACA GGACAAATGTTGTTGGATCATGATGGTGCCACGTATAATATGAATGGGATCAGACGGAAGTTCTTGGTTCAGTGGGTTTGGAACCATTTCGTTAGTTACT GTACTGGCCCTAATGCCCTTGATCAGTAG
AA sequence Show only first row Show all	>Potri.012G128100.1 pacid=42783606 polypeptide=Potri.012G128100.1.p locus=Potri.012G128100 ID=Potri.012G128100.1.v4.1 annot-version=v4.1 MAPSTSHASVLLIATILALLLAATPITCWRPWPHLKPNSSDLLYDSSKKFEGSSEFVHLRYHMGPVLTGNITVHTIWYGRWEKSQKKIIREFINSISTVN ARPPSVSGWWRTVQLYTDQTGANISHTVQLGQEKNDRFYSHGKSLTRLSIQSVIKSAVTAKSKPLPTNPKNGLYLLLTSDDVYVQDFCGQVCGFHYFTFP SIVGYTLPYAWVGNSEKLCPGVCAYPFSVPKYIPGLKALKSPNGDVGVDGMISVIAHEIAELATNPLVNAWYAGQDPSFPVEIADLCEGIYGTGGGGSYT GQMLLDHDGATYNMNGIRRKFLVQWVWNHFVSYCTGPNALDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Potri.012G128100 [exp]	0	1
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.003G116000 [exp]	1.00	0.8229	Pt-SMO1.1
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.015G061400 [exp]	3.74	0.8207
AT3G54400			Eukaryotic aspartyl protease f...		Potri.001G028200 [exp]	11.48	0.7771
AT1G75060			unknown protein		Potri.002G133500 [exp]	15.74	0.7696
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Potri.001G141400 [exp]	17.14	0.7705
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.009G039700 [exp]	18.00	0.7594
AT5G58010	bHLH	LRL3, bHLH082	LJRHL1-like 3 (.1)		Potri.006G135600 [exp]	20.19	0.7361
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.015G057800 [exp]	20.97	0.7723
AT4G23720			Protein of unknown function (D...		Potri.001G096000 [exp]	21.21	0.7612
AT2G35585			unknown protein		Potri.008G140000 [exp]	22.13	0.7696

Compare expression of checked genes

Potri.012G128100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.