Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02000 544 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 540 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 518 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT4G12250 499 / 1e-176 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G30440 479 / 8e-169 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT3G23820 478 / 9e-168 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT3G53520 83 / 5e-17 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT3G14790 83 / 7e-17 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT2G28760 79 / 5e-16 UXS6 UDP-XYL synthase 6 (.1.2.3) AT1G78570 79 / 9e-16 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068400 [exp] 536 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 530 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.017G059100 [exp] 505 / 2e-178 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 499 / 9e-177 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.001G320000 [exp] 498 / 1e-175 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.018G100400 [exp] 471 / 2e-165 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 459 / 7e-161 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G116750 [exp] 167 / 2e-50 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.014G129200 [exp] 87 / 3e-18 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030281 [exp] 548 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 536 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10031127 [exp] 536 / 0 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 533 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 528 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10032391 [exp] 500 / 8e-177 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10016640 [exp] 492 / 3e-173 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10022552 [exp] 488 / 1e-171 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10008893 [exp] 483 / 5e-170 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015496 [exp] 473 / 2e-166 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF04321 [poplar] [flax] RmlD_sub_bind RmlD substrate binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G128200.1 pacid=42782577 polypeptide=Potri.012G128200.1.p locus=Potri.012G128200 ID=Potri.012G128200.1.v4.1 annot-version=v4.1 ATGGACAAACCATTGAGAACCCATTTTTCACTCATTAAATTAATAGCCTGGACCTGCATTTTCCTTGGCCTAATCCTCTTCTTCTCTTTACACTACCCTC ACTCAAGTCCCAGTAACAGACTGAAGTATTTAGAAGACTCTGATTGGAAGTATCAGATTCTCAATTCGGGTCGACCCAAATCAAGAAATGGGTTCCGGGT TTTGGTCACTGGAGCTGCTGGATTTGTTGGAATGCACGTGTCCACTGCACTTAGGCAGCGAGGAGATGGCGTTGTTGGCCTTGATAACTTCAATGGCTAC TATGAAAAATCATTGAAGAGAGCAAGAGAGGATTTGCTGAAAAGTAAAGATGTTTTTATCGTTGAAGGTGATATAAATGATGGTGTTTTATTGACAAAGC TTTTTAAATTAGTGAAATTTACACATGTAATGCATTTAGCAGCACAGGCTGGTGTAAGGTATGCAATGAAGAATCCAGGGTCTTATGTTCATAGTAACAT TGGTGGTTTTGTTAGTTTACTTGAAGTTTGTAAATTAATGAATCCACAGCCTGCCATTGTGTGGGCATCATCTAGTTCTGTTTATGGACTCAATAAAAAA GTACCCTTTTCAGAGATTGATAGGACTGATAATCCTTCTAGTCTCTATGCTGCTACTAAGAAGGCTGGTGAGGCTATAGCACACACTTATAATCATATTC ATGGTTTATCAATCACCGGACTGCGGTTTTTCACGGTTTATGGTCCTTGGGGAAGACCGGATATGGCTTATTTCTTTTTTACTAGGGACATGTTGAAAGG GAAGCAGATTTCAGTTTTTGAAGGGCTTAATGGGTTTACTGTTTCGAGGGATTTTACTTACATTGATGATATAGTGAAGGGCTGTTTAGGTGCATTGGAT ACTGCTACCAAGAGTACTGGAAGTGGTGGGGTTAAGAAAGGCCCGGCGCAATTGCGGGTTTATAATCTTGGGAATACCTCACCGGTGCCAGTTAGTAAGC TTGTTAATATATTGGAGAAGTTGTTGAAGGTTAAGGCTAATAAGGTAGTGTCTCCAATGCCTGCAAATGGGGATGTGCTGTTTACTCATGCTAATATTAG TTTAGCAAGGAGGGAGCTTGGTTATAAGCCCACTACTGACTTGCAATCAGGATTGAAGAAATTTGTGGCATGGTATCTGGATTACTATAAACCATCCGGG AAGAAGAGTTCTGTCTAA
AA sequence Show only first row Show all	>Potri.012G128200.1 pacid=42782577 polypeptide=Potri.012G128200.1.p locus=Potri.012G128200 ID=Potri.012G128200.1.v4.1 annot-version=v4.1 MDKPLRTHFSLIKLIAWTCIFLGLILFFSLHYPHSSPSNRLKYLEDSDWKYQILNSGRPKSRNGFRVLVTGAAGFVGMHVSTALRQRGDGVVGLDNFNGY YEKSLKRAREDLLKSKDVFIVEGDINDGVLLTKLFKLVKFTHVMHLAAQAGVRYAMKNPGSYVHSNIGGFVSLLEVCKLMNPQPAIVWASSSSVYGLNKK VPFSEIDRTDNPSSLYAATKKAGEAIAHTYNHIHGLSITGLRFFTVYGPWGRPDMAYFFFTRDMLKGKQISVFEGLNGFTVSRDFTYIDDIVKGCLGALD TATKSTGSGGVKKGPAQLRVYNLGNTSPVPVSKLVNILEKLLKVKANKVVSPMPANGDVLFTHANISLARRELGYKPTTDLQSGLKKFVAWYLDYYKPSG KKSSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.012G128200 [exp]	0	1
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	1.73	0.8657
AT5G62890			Xanthine/uracil permease famil...		Potri.012G077400 [exp]	2.00	0.8639
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	8.66	0.8356
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.010G126600 [exp]	10.95	0.7995
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.013G114300 [exp]	11.13	0.8048
AT3G05020		ACP1	acyl carrier protein 1 (.1)		Potri.013G031300 [exp]	13.74	0.7965
AT4G30320			CAP (Cysteine-rich secretory p...		Potri.006G171300 [exp]	15.19	0.7867
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Potri.006G095800 [exp]	15.23	0.7225	CAC3.1
AT3G56130			biotin/lipoyl attachment domai...		Potri.008G074100 [exp]	18.33	0.7762
AT5G39240			unknown protein		Potri.017G093000 [exp]	19.49	0.7734

Compare expression of checked genes

Potri.012G128200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.