Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51560 906 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G45340 724 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G22730 664 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 219 / 3e-60 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G22130 212 / 2e-59 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT3G25560 211 / 2e-59 NIK2 NSP-interacting kinase 2 (.1.2.3) AT4G20140 214 / 1e-58 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 211 / 1e-57 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G16000 205 / 3e-57 NIK1 NSP-interacting kinase 1 (.1) AT1G68400 205 / 4e-57 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G130100 [exp] 1176 / 0 AT5G51560 940 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G068700 [exp] 808 / 0 AT2G45340 831 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G147000 [exp] 796 / 0 AT2G45340 808 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G117800 [exp] 750 / 0 AT4G22730 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G115100 [exp] 721 / 0 AT4G22730 788 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G108000 [exp] 217 / 9e-62 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.013G091000 [exp] 214 / 7e-59 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 211 / 6e-58 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G059100 [exp] 205 / 2e-57 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031703 [exp] 903 / 0 AT5G51560 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031123 [exp] 898 / 0 AT5G51560 855 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004333 [exp] 658 / 0 AT4G22730 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004032 [exp] 650 / 0 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028916 [exp] 641 / 0 AT4G22730 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 579 / 0 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031702 [exp] 268 / 3e-86 AT5G51560 258 / 2e-83 Leucine-rich repeat protein kinase family protein (.1) Lus10034350 [exp] 207 / 3e-58 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10036251 [exp] 213 / 4e-58 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10003926 [exp] 206 / 3e-57 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G128700.1 pacid=42782503 polypeptide=Potri.012G128700.1.p locus=Potri.012G128700 ID=Potri.012G128700.1.v4.1 annot-version=v4.1 ATGGGTTTTGCTGTTTTTCTCTTAGCTTTCTTTCTTTTCCTGTCAAGAACAAAATGGGTTCTTGCAAATACTGAGATTAGAGCACTCATGGATATGAAAG ATGCTCTAGACCCAGAAGCCAGGTACCTGAGTTCATGGAACATTAATGGTAGCCCATGTGATGGTTCATTTGAAGGTGTTGCTTGCAATGAGAATGGTCA AGTGGCTAATATTTCATTGCAAGGAAAAGGGCTTAACGGGAAGGTGTCCCCTGCTATTACTGGGTTAAAGTATTTGACTGGTTTGTACTTGCATTACAAC TCTTTGTATGGAGAGATACCAAGAGAAATAGCTAACCTAACCGCGCTAAGTGATTTGTACTTGAATGTGAATAATCTGTCCGGGGAGATTCCTCCTGAGA TTGGAAACATGGCCAATTTGCAAGTTTTGCAGCTTTGTTATAACCAGTTCACTGGAAGTATACCTTCTGAGCTGGGGTCCCTGGAGAGGCTTAGTGTTCT TGCTTTGCAGTCAAATCATCTCACTGGAGCAATCCCTGCGAGTTTAGGGGATTTGGGGATGTTAATGAGGCTAGATTTGAGCTACAATCACTTCTTTGGT TCAGTTCCAACAAAAGTAGCAGATGCTCCTCTGCTTGAATTTCTAGATATCCGAAATAACTCACTCTCTGGCAATGTACCTCTAGCTCTTAAGAGATTGG ATGATGGATTCTTGTATGAAAACAACTTGGGATTATGTGGAGCTGGGTTTATGTCTCTGAAAGCTTGCAATGCATCGGGTCTTATGCCAGGCAGACCTGA ACCCTATGGAACAAAAGTAAATGGCCTGCCAAGAGAGATCCCAGAAACAGCAAATTTGCGGTTGCCTTGCAACCAAAGTCAGTGTTCGAACCAGTCCAAG GCCCATCACGCATCAGCTGCTGTTGTTACATTTGTTGTGACTATTTTACTGGCAGCCATAGGAATTCTGACATTTATTCAGTATCGCCGCCGGAAACAGA AGCTTGCTAGCTCATTTGAAATTTCTGATAGCCGCCTTAGTACTGACCAGGCAAAGGGGGTATACAGGAAGAATGGCTCTCCTCTAATCAGTCTTGAGTA TCCTAATGGATGGGACCCTTTGGCTGATGGCAGGAATTTAAGTGGGAACGCACAGGATGTCTTCCAGAGCTTCAGGTTCAACTTGGAAGAGGTGGAGACA GCCACACAGTACTTTTCCAAGGTGAATTTGTTAGGTAAGATTAACTTTTCTGCAACCTACAGAGGAATTTTAAGAGATGGATCCACGGTTGCCATTAAAA GCATTAGTAAAAGCAGCTGCAAGTCGGAGGAAGCTGAGTTCTTGAAGGGGTTGAATACTTTGACATCACTGAGGCATGAGAATTTAGTGAGCTTGAGAGG ATTCTGCTGTTCAAGGGGCCGAGGGGAGTGCTTTCTCATTTATGATTTTGTTCCCAATGGTAATTTGCTGAGATATCTTGATGTGAAGGATGGGGATGGC CATGTGCTTGAATGGTCCACCAGAGTTTCAATTGTCAGGGGTATTGCCAGAGGTGTAGCATATTTGCATGGGTACAACGCAAACAAACCTTCTCTGATCC ACCAAAACATTACTGCTGAAAAGGTCCTCATCGACCAGCGATGCAATCCGTTGCTCGCGGATTCTGGCTTTCAGAACCTTCTTACGAATGACATTGTGTT CTCAGCACTCAAGACCAGTGCTGCCATGGGGTACCTAGCTCCTGAGTACACTACCACAGGCCGGTTCACAGACAAAAGTGACGTGTATGCATTTGGAGTA ATCGTTTTCCAAGTTCTCTCAGGGAAGCAAAAGGTGAGTAACTTGGTGCGTCTGGGAGCAGATGCATGCAGATTCCAAGATTATATTGACCCCAATCTCC ACGGCCGATTCTTTGAATACGAAGCAGCTAAGCTTGCAAGAATTGCTTGGCTTTGCACTCTCGAGTCTCCTATGGAAAGACCATCTATGGAAGCAGTTGT TCATGAACTAGGTAGCTGCAGTAGCTGTCTCTAG
AA sequence Show only first row Show all	>Potri.012G128700.1 pacid=42782503 polypeptide=Potri.012G128700.1.p locus=Potri.012G128700 ID=Potri.012G128700.1.v4.1 annot-version=v4.1 MGFAVFLLAFFLFLSRTKWVLANTEIRALMDMKDALDPEARYLSSWNINGSPCDGSFEGVACNENGQVANISLQGKGLNGKVSPAITGLKYLTGLYLHYN SLYGEIPREIANLTALSDLYLNVNNLSGEIPPEIGNMANLQVLQLCYNQFTGSIPSELGSLERLSVLALQSNHLTGAIPASLGDLGMLMRLDLSYNHFFG SVPTKVADAPLLEFLDIRNNSLSGNVPLALKRLDDGFLYENNLGLCGAGFMSLKACNASGLMPGRPEPYGTKVNGLPREIPETANLRLPCNQSQCSNQSK AHHASAAVVTFVVTILLAAIGILTFIQYRRRKQKLASSFEISDSRLSTDQAKGVYRKNGSPLISLEYPNGWDPLADGRNLSGNAQDVFQSFRFNLEEVET ATQYFSKVNLLGKINFSATYRGILRDGSTVAIKSISKSSCKSEEAEFLKGLNTLTSLRHENLVSLRGFCCSRGRGECFLIYDFVPNGNLLRYLDVKDGDG HVLEWSTRVSIVRGIARGVAYLHGYNANKPSLIHQNITAEKVLIDQRCNPLLADSGFQNLLTNDIVFSALKTSAAMGYLAPEYTTTGRFTDKSDVYAFGV IVFQVLSGKQKVSNLVRLGADACRFQDYIDPNLHGRFFEYEAAKLARIAWLCTLESPMERPSMEAVVHELGSCSSCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51560			Leucine-rich repeat protein ki...		Potri.012G128700 [exp]	0	1
AT5G15230		GASA4	GAST1 protein homolog 4 (.1.2)		Potri.017G083000 [exp]	1.00	0.9413	GASA4.2
AT2G46890			Protein of unknown function (D...		Potri.014G109200 [exp]	1.41	0.9395
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.003G020200 [exp]	2.82	0.9328
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	3.16	0.9301
AT1G21090			Cupredoxin superfamily protein...		Potri.002G067600 [exp]	3.31	0.9150
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.019G037600 [exp]	4.24	0.9193
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.010G193800 [exp]	5.47	0.9228
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.001G043600 [exp]	6.32	0.9220
AT2G40820			unknown protein		Potri.006G035300 [exp]	6.70	0.9091
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	7.34	0.9334

Compare expression of checked genes

Potri.012G128700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.