Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62280 204 / 3e-66 Protein of unknown function (DUF1442) (.1) AT3G60780 74 / 4e-16 Protein of unknown function (DUF1442) (.1) AT2G45360 69 / 4e-14 Protein of unknown function (DUF1442) (.1) AT1G62840 52 / 4e-08 Protein of unknown function (DUF1442) (.1) AT1G12320 47 / 3e-06 Protein of unknown function (DUF1442) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G130500 [exp] 359 / 1e-127 AT5G62280 199 / 2e-64 Protein of unknown function (DUF1442) (.1) Potri.014G069000 [exp] 183 / 2e-58 AT5G62280 147 / 6e-44 Protein of unknown function (DUF1442) (.1) Potri.002G147200 [exp] 90 / 1e-22 AT5G62280 77 / 9e-18 Protein of unknown function (DUF1442) (.1) Potri.014G098800 [exp] 88 / 4e-21 AT2G45360 99 / 5e-25 Protein of unknown function (DUF1442) (.1) Potri.003G115200 [exp] 74 / 7e-16 AT2G45360 238 / 9e-80 Protein of unknown function (DUF1442) (.1) Potri.001G117600 [exp] 72 / 2e-15 AT2G45360 226 / 2e-75 Protein of unknown function (DUF1442) (.1) Potri.002G147100 [exp] 70 / 1e-14 AT3G60780 269 / 4e-92 Protein of unknown function (DUF1442) (.1) Potri.014G068900 [exp] 65 / 8e-13 AT2G45360 251 / 2e-85 Protein of unknown function (DUF1442) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031701 [exp] 237 / 3e-79 AT5G62280 179 / 2e-56 Protein of unknown function (DUF1442) (.1) Lus10031122 [exp] 226 / 6e-75 AT5G62280 166 / 3e-51 Protein of unknown function (DUF1442) (.1) Lus10027191 [exp] 173 / 4e-54 AT5G62280 150 / 5e-45 Protein of unknown function (DUF1442) (.1) Lus10024565 [exp] 56 / 2e-09 AT2G45360 223 / 1e-73 Protein of unknown function (DUF1442) (.1) Lus10041061 [exp] 56 / 3e-09 AT5G62280 55 / 6e-09 Protein of unknown function (DUF1442) (.1) Lus10006163 [exp] 54 / 2e-08 AT5G62280 59 / 2e-10 Protein of unknown function (DUF1442) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF07279 [poplar] [flax] DUF1442 Protein of unknown function (DUF1442)
Representative CDS sequence Show only first row Show all	>Potri.012G128900.1 pacid=42782778 polypeptide=Potri.012G128900.1.p locus=Potri.012G128900 ID=Potri.012G128900.1.v4.1 annot-version=v4.1 ATGGGTTACTGGTCTGCTGAGAATGCTACTAATGCCTACCTCAAAACTTTGAGAATGGGCCAAAGGGCAAACGAGCCAGATGTAGCTGAATTCATTTCGG CATTAGCGGCTGGTAACAATGCACAGCTAATGGTTGTAGCATGTGCCAATGCTGCTGCCACCACTTCATTAACCTTGGTAGCTGCAGCTCATCAAACTGG TGGCCGTGTGGTTTGCATCCTTCCTGGACATCAAGAATTACAGTTGTCTAAGAAGATCCTGGGCTATGATGCCTGTCATGTTGAGTTTGTTATTGGAGAA GCTCAAAGTCTACTATTAACCCATTACAGTGAGGCAGATTTTGTGCTTATTGATTGCAACCTTGAGAACCATGAAGCTATTCTTGGATCAGTACAAGCTA GAAAGAAAAGAAATGGAGCTGTTGTTGTGGGGTATAATGCTTTTAGCAAGGGATCATGGCGGTCTGGTGGGTCGAAAACACAGTTGTTGCCTATTGGAGG AGGATTGCTAGTGACCAGAATTTCTGCCAGTGCCAAGATTGCTGATGGCTGTGGTCATGGAAAGAGGAGTCATTGGGTTGTTAAGGTAGATGAATGTACA GGTGAAGAGCATGTTTTCAGGGTCAGATTTCCACAAGGAAAGCAGATTGAAGCTTAA
AA sequence Show only first row Show all	>Potri.012G128900.1 pacid=42782778 polypeptide=Potri.012G128900.1.p locus=Potri.012G128900 ID=Potri.012G128900.1.v4.1 annot-version=v4.1 MGYWSAENATNAYLKTLRMGQRANEPDVAEFISALAAGNNAQLMVVACANAAATTSLTLVAAAHQTGGRVVCILPGHQELQLSKKILGYDACHVEFVIGE AQSLLLTHYSEADFVLIDCNLENHEAILGSVQARKKRNGAVVVGYNAFSKGSWRSGGSKTQLLPIGGGLLVTRISASAKIADGCGHGKRSHWVVKVDECT GEEHVFRVRFPQGKQIEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62280			Protein of unknown function (D...		Potri.012G128900 [exp]	0	1
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.013G155500 [exp]	8.48	0.8602
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Potri.010G051100 [exp]	10.48	0.8228
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	14.24	0.8442
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Potri.015G082200 [exp]	14.83	0.8413
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G072841 [exp]	17.23	0.8165
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	19.54	0.8582
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.002G019900 [exp]	22.97	0.8558	Pt-CLV1.1
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073316 [exp]	30.62	0.8371
AT3G24150			unknown protein		Potri.006G067100 [exp]	35.49	0.7766
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.015G039000 [exp]	38.98	0.8276

Compare expression of checked genes

Potri.012G128900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.