Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51570 480 / 5e-173 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G62740 335 / 7e-116 AtHIR4, ATHIR1 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT3G01290 329 / 1e-113 AtHIR2 hypersensitive induced reaction 2, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT1G69840 311 / 2e-106 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) AT5G54100 60 / 5e-10 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT4G27585 56 / 1e-08 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G130600 [exp] 521 / 0 AT5G51570 510 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078100 [exp] 332 / 7e-115 AT5G62740 488 / 3e-176 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078000 [exp] 325 / 4e-112 AT5G62740 518 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G070500 [exp] 315 / 3e-108 AT5G62740 484 / 3e-175 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G065001 [exp] 188 / 3e-59 AT5G62740 312 / 4e-108 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G001900 [exp] 51 / 4e-07 AT4G27585 499 / 2e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G005500 [exp] 49 / 3e-06 AT4G27585 463 / 3e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G009800 [exp] 47 / 1e-05 AT4G27585 382 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015032 [exp] 501 / 0 AT5G51570 532 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10038907 [exp] 496 / 2e-179 AT5G51570 529 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10033099 [exp] 333 / 5e-115 AT5G62740 533 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10007268 [exp] 332 / 8e-115 AT5G62740 510 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015356 [exp] 331 / 4e-114 AT5G62740 506 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004268 [exp] 314 / 1e-107 AT5G62740 535 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10037213 [exp] 314 / 1e-107 AT1G69840 514 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10036715 [exp] 311 / 2e-106 AT1G69840 516 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10032909 [exp] 54 / 6e-08 AT4G27585 498 / 4e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015597 [exp] 46 / 2e-05 AT4G27585 383 / 7e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [poplar] [flax] SPFH PF01145 [poplar] [flax] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Potri.012G129000.1 pacid=42784188 polypeptide=Potri.012G129000.1.p locus=Potri.012G129000 ID=Potri.012G129000.1.v4.1 annot-version=v4.1 ATGGGAAGTTCGTTCTGTTTTTTATGTGGCTGTGTAGACCAAGCAAGCGTTGGTGTTATTGAAAGGTGGGGTCGTTTTGAGCGATTAGCTCAACCAGGTT TCCACTTCTTTAACTGTTTTGTTGGTCAATGTTTAGCCGGTGTTCTGTCTACCAGAATCCACTCTCTTGATGTTCGATGCGAAACCAAAACCAAGGACAA TGTCTTTGTGCATTTGGTTTGCTCGATTCAGTATCGAGTAGTCAAGGAAAATGCTGATGATGCATTCTATGAGCTCGCAAATCCCAGGGAGCAGATTCAG GCTTATGTGTTTGATGTGGTTCGAGCTCTCGTTCCAAGAATGACATTGGATGATCTTTTTGAGCAGAAGAGTGAAGTTGCCAAAGCTGTCTTGGAGGAAT TGGAGAAGGTGATGGGAACCTATGGCTACAGCATAGAGCACATTCTGATGGTTGACATCATACCTGATGATACTGTTCGCAAGGCAATGAACGAGATCAA TGCAGCTCAACGACTTCAGCTTGCTAGTGTATACAAAGGCGAAGCTGAAAAGGTGTTCCTAGTCAAAAAAGCTGAGGCTGAGGCTGAAGCCAAGTACCTT GGTGGGGTTGGTGTGGCCAGACAGAGGCAGGCAATCACAGATGGTTTGAGAGAGAACATACTAGAGTTCTCACACAAGGTGGAGGGAACGTCAGCTAAGG AAGTGATGGATCTCATCATGATCACGCAGTACTTTGACACCATCAAAGACCTCGGCAACTCATCAAAGAACACCACTATTTTTATTCCTCATGGCCCTGG TCATGTAAGGGATATTAGTGACCAAATTCGCAATGGGATGATGGAGGCATCCAGTGCTCAAATTGATCAGCAGTGA
AA sequence Show only first row Show all	>Potri.012G129000.1 pacid=42784188 polypeptide=Potri.012G129000.1.p locus=Potri.012G129000 ID=Potri.012G129000.1.v4.1 annot-version=v4.1 MGSSFCFLCGCVDQASVGVIERWGRFERLAQPGFHFFNCFVGQCLAGVLSTRIHSLDVRCETKTKDNVFVHLVCSIQYRVVKENADDAFYELANPREQIQ AYVFDVVRALVPRMTLDDLFEQKSEVAKAVLEELEKVMGTYGYSIEHILMVDIIPDDTVRKAMNEINAAQRLQLASVYKGEAEKVFLVKKAEAEAEAKYL GGVGVARQRQAITDGLRENILEFSHKVEGTSAKEVMDLIMITQYFDTIKDLGNSSKNTTIFIPHGPGHVRDISDQIRNGMMEASSAQIDQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51570			SPFH/Band 7/PHB domain-contain...		Potri.012G129000 [exp]	0	1
AT2G38430			unknown protein		Potri.019G029900 [exp]	3.60	0.8111
AT2G38430			unknown protein		Potri.019G029800 [exp]	5.74	0.7640
AT5G49880			mitotic checkpoint family prot...		Potri.003G000900 [exp]	17.14	0.7356
AT3G05640			Protein phosphatase 2C family ...		Potri.010G006100 [exp]	17.97	0.7540
AT5G50840			unknown protein		Potri.010G219700 [exp]	20.14	0.7997
AT1G72880			Survival protein SurE-like pho...		Potri.001G196800 [exp]	25.27	0.6916
AT5G36290			Uncharacterized protein family...		Potri.019G053400 [exp]	31.74	0.7899
AT5G25265			unknown protein		Potri.006G258800 [exp]	43.88	0.6914
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.005G110600 [exp]	56.96	0.7295
					Potri.019G129466 [exp]	57.61	0.7538

Compare expression of checked genes

Potri.012G129000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.