Plant FIBer expression Database

Potri.012G129100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12380 890 / 0 unknown protein
AT1G62870 875 / 0 unknown protein
AT1G79740 53 / 8e-07 hAT transposon superfamily (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G130800
[exp]
1378 / 0 AT1G12380 899 / 0.0 unknown protein
Potri.003G115900
[exp]
961 / 0 AT1G62870 1028 / 0.0 unknown protein
Potri.001G116600
[exp]
957 / 0 AT1G62870 1017 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004325
[exp]
852 / 0 AT1G62870 977 / 0.0 unknown protein
Lus10024556
[exp]
717 / 0 AT1G12380 797 / 0.0 unknown protein
Lus10032194
[exp]
716 / 0 AT1G12380 788 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.012G129100.1 pacid=42783079 polypeptide=Potri.012G129132.1.p locus=Potri.012G129100 ID=Potri.012G129100.1.v4.1 annot-version=v4.1
ATGGCTTCAACAAGTTCAACTCCAAGTGACCCTTCTATTTCTATACATGATGACACAGCAATCAGAGCTGTGAACAAGAGATATGAAGGGTTGGTGACTG
TTAAAACAAAGGCAATCAAGGGTAAAGGGGCATGGTATTGGGCTCATTTAGATCCAATTTTGATGAAGAATCCGGATACAAATCTCCCTAAAGCAGTTAA
ACTTAAGTGTTGTTTATGTGAAGCTGTTTTTTCTGCTTCAAACCCATCAAGGACTGCCACTGAACATCTCAAAAAGGGAACTTGTCCTAATTTTGTATCA
GTTTCAAGACCCAATTCAGCAATTTCTCCATTGCCTATATCTTCTTTGCCTTCCCCACCTTCAAATAATCATAGAAAGAGAAGCTCACAAATAGGTACTG
CTTTAAAGTCTCTAGCTTTAGTTGAGTCCAATAAATACTGTGACCAAGTTGGTTACTTTAATTCTGGGTTTACTCCGAAAGGTCAGGATTTAGTGTTGTC
TGGTGGAAAAGAGGATTTGGGTGCATTAGCGATGTTGGAAGATAGTGTTAAGAGGCTTAAAAGTCCAAAAGCTTCACCAGGTCCCTTGTTAAACAAGGAC
CAGATTGATTCTGCTCTTGAGTTACTGAGTGATTGGTTTTATGAGGTTTGTGGGTCAGTATCATTTTCTAGTCTTGAGCATCCAACGTTTAGAGCTTTTC
TTAATCAAGTTGGTTTGCCTTGTTTGTCAAGGAGGGAATTGTCTGGTGCTAGGCTTGAAAATCGGTTTTATGAGGCAAAATCTGAGGTGGAAGCTAGAAT
TAGAGATGCTATGTTCTTTCAAGTTGCATGTAATGGATGGAAGAGTAATAAATGCTGTAGTGGGGAAGATAACTTGGTTAAGTTTGGTGTTAATCTTCCA
AATGGAACTAGTGTGTTTCACAAGGCAGTGATAACTGGAGGAGGAACAGCGTCGTCGAAGTATGCAGAGGAGATTATGTGGGGGGCAGTGACGGGGATAT
GTGGTAGTGGTTTGCAGAGATGTGCTGGGATAGTTTCTGATAAGTACAAGGCTGAGGCTTTGAGGAACTTGGAGATTCAGTATCCGTGGATGGTGAATAT
TTCTTGTCAGATTCAGGGGTTTGTTAGTTTGATCAAGGATTTTAGCAAGGAGCTTCAACTTTTCAGGACTGTTATTGAAAATTGCTTGAAGCTTGCTAAT
TTTGTAAATAATGCATCTCAAGTTAGGAGTAGCTTCCAGAAGTACAGGATGCAGGAGCTTGATTACACTGGGCTGCTTCGAGTTCCTTGGTGCAAATGTG
ATTGTGTAAAGGACTTTGCGCCTGTTTATGCAATGCTGGAGGATGTATTGAGCTGTGCCCGTGTGCTCCAAATGGTTATCTTAGACGAGTCATATAAGTT
GATATGTGTGGAGGATCCTGTCGCTAGGGAGGTCTCTGGGATGATTCAAAGTGAGGGTTTTTGGAATGATTTGGAAGCTGTTTATTCGCTAATGAAGCTC
ATTAGAGGGATGGCTCAAGAGATTGAGACTGAGCGGCCGTTGATAGGGGAATGCCTTCCTCTTTGGCAAGAGTTGAAAGCAAAAGTGAAGGACTGGGGTG
CAAGATTCAATATTGCAGAAGGCCAAGTTGAGAAAATAGTTGAAAAGAGATTCAGAAAGAACTATCACCCAGCATGGTCAGCTGCATTTATACTTGACCC
TCGTTATTTGATGAGGGACACAAGTGGAAAATACCTTCCACCTTTCAAGTGCTTGACTCATGAGCAGGAAAAGGATGTTGATAAGCTTATAACCCGTTTG
GCATCCAGGGAAGAAGCTCATGTTGCCTTAATGGAGCTTATGAAATGGAGGTCAGAAGGTATGGATCCACTATATGCACAGGCTGTTCAGGTTAAACAGC
GAGACCCTTTGACTGGAAAGATGAAAATTGCAAATCCTCAAGGCAGCAGACTAGTGTGGGAAACTTGCCTGAGTGAGTATAAAACACTAGGGAAGGTTGC
AGTTAGGCTTATCTTTCTCCATGCGACCTCAAGCGGGTTTAAGTGCAATTGGTCTTGCATGAAATGGTTTTGTATCCATAGAAACTCAAGGGTGGGACTT
GAACGGGCACAGAAGATGATATTCGTTGCAGCTCATGCAAAGCTTGAGAAACGTGATTTCTCAAATGAAGAAGAAAAGGATGGGGAGCTGTTCCGCATGG
TAGGCTGTGAAGATGACATGCTCAACGAGGTCTTTGTCGAAGCACCATCAGTGTAA
AA sequence
>Potri.012G129100.1 pacid=42783079 polypeptide=Potri.012G129132.1.p locus=Potri.012G129100 ID=Potri.012G129100.1.v4.1 annot-version=v4.1
MASTSSTPSDPSISIHDDTAIRAVNKRYEGLVTVKTKAIKGKGAWYWAHLDPILMKNPDTNLPKAVKLKCCLCEAVFSASNPSRTATEHLKKGTCPNFVS
VSRPNSAISPLPISSLPSPPSNNHRKRSSQIGTALKSLALVESNKYCDQVGYFNSGFTPKGQDLVLSGGKEDLGALAMLEDSVKRLKSPKASPGPLLNKD
QIDSALELLSDWFYEVCGSVSFSSLEHPTFRAFLNQVGLPCLSRRELSGARLENRFYEAKSEVEARIRDAMFFQVACNGWKSNKCCSGEDNLVKFGVNLP
NGTSVFHKAVITGGGTASSKYAEEIMWGAVTGICGSGLQRCAGIVSDKYKAEALRNLEIQYPWMVNISCQIQGFVSLIKDFSKELQLFRTVIENCLKLAN
FVNNASQVRSSFQKYRMQELDYTGLLRVPWCKCDCVKDFAPVYAMLEDVLSCARVLQMVILDESYKLICVEDPVAREVSGMIQSEGFWNDLEAVYSLMKL
IRGMAQEIETERPLIGECLPLWQELKAKVKDWGARFNIAEGQVEKIVEKRFRKNYHPAWSAAFILDPRYLMRDTSGKYLPPFKCLTHEQEKDVDKLITRL
ASREEAHVALMELMKWRSEGMDPLYAQAVQVKQRDPLTGKMKIANPQGSRLVWETCLSEYKTLGKVAVRLIFLHATSSGFKCNWSCMKWFCIHRNSRVGL
ERAQKMIFVAAHAKLEKRDFSNEEEKDGELFRMVGCEDDMLNEVFVEAPSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12380 unknown protein Potri.012G129100
[exp]
0 1
AT1G47655 DOF Dof-type zinc finger DNA-bindi... Potri.014G036600
[exp]
1.00 0.8064
AT1G62870 unknown protein Potri.003G115900
[exp]
2.44 0.7954
AT1G54610 Protein kinase superfamily pro... Potri.013G032200
[exp]
7.41 0.7124
AT3G26935 DHHC-type zinc finger family p... Potri.015G101900
[exp]
8.83 0.6804
AT3G09070 Protein of unknown function (D... Potri.016G111400
[exp]
11.35 0.7426
AT4G12080 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localize... Potri.014G070000
[exp]
15.49 0.7253
AT4G12730 FLA2 FASCICLIN-like arabinogalactan... Potri.014G168100
[exp]
15.87 0.7261
AT5G07250 ATRBL3 RHOMBOID-like protein 3 (.1.2) Potri.012G139600
[exp]
16.61 0.6650
AT1G78700 BZR BEH4 BES1/BZR1 homolog 4 (.1) Potri.011G071800
[exp]
18.43 0.7125
AT5G67190 AP2_ERF DEAR2 DREB and EAR motif protein 2 (... Potri.007G046500
[exp]
21.63 0.6375

Potri.012G129100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.