Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25340 344 / 8e-114 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G05420 158 / 3e-46 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G12340 126 / 2e-31 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G45680 103 / 3e-25 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT5G48580 96 / 4e-23 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 95 / 7e-23 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT5G48570 99 / 9e-22 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 94 / 3e-20 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT3G10060 82 / 2e-17 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G39710 77 / 6e-16 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G130900 [exp] 726 / 0 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.007G000500 [exp] 127 / 5e-31 AT3G12340 149 / 1e-38 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G075500 [exp] 101 / 2e-24 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.002G248200 [exp] 92 / 6e-22 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.014G149400 [exp] 98 / 1e-21 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 95 / 2e-20 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.006G033400 [exp] 91 / 3e-19 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G096600 [exp] 86 / 1e-18 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.010G201600 [exp] 73 / 8e-15 AT3G55520 219 / 2e-73 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015029 [exp] 405 / 4e-138 AT4G25340 331 / 8e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10038905 [exp] 394 / 5e-134 AT4G25340 313 / 1e-102 FK506 BINDING PROTEIN 53 (.1.2) Lus10031700 [exp] 367 / 1e-121 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10031121 [exp] 364 / 4e-121 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10006949 [exp] 106 / 3e-26 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10002339 [exp] 99 / 3e-24 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1) Lus10024735 [exp] 98 / 1e-23 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10025889 [exp] 97 / 1e-23 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10003170 [exp] 96 / 3e-23 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10038215 [exp] 98 / 9e-22 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [poplar] [flax] FKBP PF00254 [poplar] [flax] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Potri.012G129200.1 pacid=42784089 polypeptide=Potri.012G129200.1.p locus=Potri.012G129200 ID=Potri.012G129200.1.v4.1 annot-version=v4.1 ATGAGCTTCTGGGGTATTGAAGTGAAACCAGGCAAGCCTCATCCTTATCACTCTGATGATGTGCAAGGAAAGCTTCGGGTAACTCAGGCAACTTTGGGCC TCGGTTCGTCAAAAGAAAGGAGCATACTCCAGTGTTCAGTTGGACACAGGAGTCCAATTTTTGTATGTTCACTGTTGCCAGGGAAAGCTGAAAGTTGCTC TCTGAATCTTGAATTTACGGATGAATTAGTAGCGTTCTCAGTGATTGGACCACAAAGCATCCATCTTTGTGGTTACTTTGATTCTGTAGAAGGAGATCAC CTCCGAGATGAATATGAATATGATTCGGGAGAGGATATTGTTGATACGGAGTCGGATGAGTCCAGTGAATATGATTATGATGATGAATATGATGACGACG ATGACGATCTTCAAATGTATTCCCCTTCGCCTGTTCCCAAAAGTGGAGTTGTAATTGAGGAGATAACTGAAGATGACAAACCTACAAAAGAAAATGGCAA GTCTAAACGGCTAAAGAAGAAGAATAATCAATCAAGTGACAAGGAAGACCAAAACAACTCTCAACAACAAATTGTTCTTAAGAGGGATAGAGGTATTTCT GTTCTGGAAAGTGAAGATGAAGATGGTTTTCCAATTTCTTCCTCTGCAAAAAACAAAGATACAGTTCAGGAGCAGCAAGCAGAACTAGATGGACAAAAAG ATAAGGAAACAACCCAAGAGACTAAGAAAAAGATGGCAAGTGAGGATAATGATGACACTAGAAAAAAGAGAAAAGTTAAAAGCGTTGATCAAGATGGTCA ACCAGAAAGGAAAACAAAGAAAAAGAAGAAGCAGAGAGAACGAGGTACAGAGGCAAAGGTTGATGAAATGGATGACAAGGAAGAGATCAACAATGCCTCT AGAGATGAAATCGAGTCCAAGCAAGTGAAAAAGCAGGATTCTACCAACCGAAACAAACATGAACAGAGGGACCTTGACACTGATGCAGATAGTATGCCCG GTGAAGATTCATCGGATAAGAAAAAGAAGAAGAATAAGAAGAAGAAAAAGACCCAGGATAGTGGAGCAACAACTAATGATCAAGCTGTTTCAGCTGCGGG AGGTGAAGCCAAGTCTTCATTGGAGTCTGAGGATAAGCAATCTACAGCCAAGTCCTCACAAGTTAGAACCTTTTCAAATGGATTGGTTATTGAAGAATTA GCAATGGGCAAACCAGATGGTAAACGAGCTTCTCCTGGAAGTCAGGTCAGTGTGCACTATATTGGTAAGCTGAAGAACGGAAAAATATTTGACTCTAATG TCGGGAGGGCTCCCTTTAAATTCCGCCTAGGTGTTGGACAAGTCATAAAAGGATGGGATGTTGGAGTTAATGGTATGCGAGTTGGGGACAAAAGAAGACT CACAATTCCACCATCGATGGGTTACGGAGATCGGGGTGCTGGTGGGAAGATACCTCCAAACTCATGGCTTGTGTTTGATGTTGAGTTGGTGAACGCTCGT TGA
AA sequence Show only first row Show all	>Potri.012G129200.1 pacid=42784089 polypeptide=Potri.012G129200.1.p locus=Potri.012G129200 ID=Potri.012G129200.1.v4.1 annot-version=v4.1 MSFWGIEVKPGKPHPYHSDDVQGKLRVTQATLGLGSSKERSILQCSVGHRSPIFVCSLLPGKAESCSLNLEFTDELVAFSVIGPQSIHLCGYFDSVEGDH LRDEYEYDSGEDIVDTESDESSEYDYDDEYDDDDDDLQMYSPSPVPKSGVVIEEITEDDKPTKENGKSKRLKKKNNQSSDKEDQNNSQQQIVLKRDRGIS VLESEDEDGFPISSSAKNKDTVQEQQAELDGQKDKETTQETKKKMASEDNDDTRKKRKVKSVDQDGQPERKTKKKKKQRERGTEAKVDEMDDKEEINNAS RDEIESKQVKKQDSTNRNKHEQRDLDTDADSMPGEDSSDKKKKKNKKKKKTQDSGATTNDQAVSAAGGEAKSSLESEDKQSTAKSSQVRTFSNGLVIEEL AMGKPDGKRASPGSQVSVHYIGKLKNGKIFDSNVGRAPFKFRLGVGQVIKGWDVGVNGMRVGDKRRLTIPPSMGYGDRGAGGKIPPNSWLVFDVELVNAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.012G129200 [exp]	0	1
AT3G18600			P-loop containing nucleoside t...		Potri.009G045300 [exp]	2.00	0.9124
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.006G044100 [exp]	2.00	0.9148	Pt-NAP57.2
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.016G041200 [exp]	4.00	0.8978	Pt-NAP57.1
AT5G06360			Ribosomal protein S8e family p...		Potri.016G070400 [exp]	4.12	0.7670
AT5G27120			NOP56-like pre RNA processing ...		Potri.005G045600 [exp]	4.24	0.9008
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.015G130900 [exp]	4.58	0.8641
AT3G05060			NOP56-like pre RNA processing ...		Potri.013G032300 [exp]	6.70	0.8947
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.012G069100 [exp]	7.34	0.7609
AT5G50310			Galactose oxidase/kelch repeat...		Potri.015G090100 [exp]	8.06	0.7940
AT1G75335			unknown protein		Potri.019G095600 [exp]	8.94	0.8508

Compare expression of checked genes

Potri.012G129200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.