Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36530 260 / 1e-85 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) AT1G74030 201 / 2e-62 ENO1 enolase 1 (.1) AT2G29560 157 / 1e-45 ENOC cytosolic enolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131100 [exp] 280 / 1e-93 AT2G36530 811 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Potri.006G116800 [exp] 266 / 4e-88 AT2G36530 814 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Potri.012G057500 [exp] 198 / 3e-61 AT1G74030 810 / 0.0 enolase 1 (.1) Potri.009G040700 [exp] 167 / 2e-49 AT2G29560 809 / 0.0 cytosolic enolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015028 [exp] 278 / 1e-92 AT2G36530 802 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10038904 [exp] 270 / 2e-89 AT2G36530 792 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10035579 [exp] 262 / 1e-86 AT2G36530 775 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10003374 [exp] 261 / 9e-86 AT2G36530 799 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10002844 [exp] 259 / 3e-85 AT2G36530 800 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10008647 [exp] 262 / 3e-84 AT2G36530 687 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10027255 [exp] 200 / 8e-62 AT1G74030 799 / 0.0 enolase 1 (.1) Lus10038963 [exp] 199 / 2e-61 AT1G74030 808 / 0.0 enolase 1 (.1) Lus10040711 [exp] 158 / 9e-46 AT2G29560 789 / 0.0 cytosolic enolase (.1) Lus10016447 [exp] 157 / 5e-45 AT2G29560 713 / 0.0 cytosolic enolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0256 [poplar] [flax] Enolase_TIM PF00113 [poplar] [flax] Enolase_C Enolase, C-terminal TIM barrel domain
Representative CDS sequence Show only first row Show all	>Potri.012G129300.2 pacid=42783111 polypeptide=Potri.012G129300.2.p locus=Potri.012G129300 ID=Potri.012G129300.2.v4.1 annot-version=v4.1 ATGGATGTTGCTGCTTCAGAATTCTATAATAACGATGACAACACCTATGATTTGAATTTCAAGGAAGAGAACAACGATGGATCACAAAAGATATCTGGAG ACAGTCTGAAGAATGTGTACAAATCATGTGCGACTGATTATCCAATTGTAACCATTGAGGATCCATTCGATCAAGATGACTGGGAACACTATGCTAAGAT GACATCTGAAATTGGTGAGCAAGTGCAGTTTGTTGGTGATGATCTCCTTGTCACAAACCCCAAGGTGAATCAAATTGGTTCTGTAACTGAAAGTATTGAA GCTGTGAAAATGTCGAAACGTGCTGGCTGGGGTGTCATGGCAAGCCACAGGAGTGTTGAAACCGAGGATACTATCATAGCTGATCTTTCGGTTGGATTGG CTACAGGACAGATCCAGACTGGAGCTCCTTGCAGATCAGAACGCCTTGCACAATACAACCATGTAGATGGAAATGTCTTTCAACATACACAGCTTAAGAT GAGGAATCTCACAAAGTATGATTTTTCATATCATACACAGCTTAAGATGAGGATCTCACAAAGTATATTACCCAAATTCAAAGCAACACAATATGCAGGT CAAGGTGAAAGAAAAAACTATCCCGTGGTCAGCTCATAG
AA sequence Show only first row Show all	>Potri.012G129300.2 pacid=42783111 polypeptide=Potri.012G129300.2.p locus=Potri.012G129300 ID=Potri.012G129300.2.v4.1 annot-version=v4.1 MDVAASEFYNNDDNTYDLNFKEENNDGSQKISGDSLKNVYKSCATDYPIVTIEDPFDQDDWEHYAKMTSEIGEQVQFVGDDLLVTNPKVNQIGSVTESIE AVKMSKRAGWGVMASHRSVETEDTIIADLSVGLATGQIQTGAPCRSERLAQYNHVDGNVFQHTQLKMRNLTKYDFSYHTQLKMRISQSILPKFKATQYAG QGERKNYPVVSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Potri.012G129300 [exp]	0	1
					Potri.013G160350 [exp]	2.64	0.8703
AT1G14320		RPL10A, RPL10, ...	SUPPRESSOR OF ACAULIS 52, ribo...		Potri.013G159301 [exp]	6.08	0.8877
AT5G26330			Cupredoxin superfamily protein...		Potri.002G161300 [exp]	7.54	0.8194
AT2G06255		ELF4-L3	ELF4-like 3 (.1)		Potri.019G131700 [exp]	9.16	0.8361
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.007G061520 [exp]	12.00	0.8442
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Potri.002G080800 [exp]	14.17	0.8127	Pt-PBC2.2
AT3G29170			Eukaryotic protein of unknown ...		Potri.016G054301 [exp]	14.73	0.8338
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.004G157900 [exp]	16.24	0.8634
AT1G23230			unknown protein		Potri.010G108350 [exp]	16.43	0.8663
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.006G269800 [exp]	16.88	0.8582

Compare expression of checked genes

Potri.012G129300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.