Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62260 202 / 1e-61 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 185 / 7e-55 AT-hook AT hook motif DNA-binding family protein (.1) AT4G12080 180 / 1e-53 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G00200 171 / 1e-50 AT-hook AT hook motif DNA-binding family protein (.1) AT4G22770 162 / 5e-47 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 156 / 5e-44 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63470 138 / 2e-37 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 136 / 4e-37 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT2G45850 132 / 2e-35 AT-hook AT hook motif DNA-binding family protein (.1.2) AT5G46640 129 / 4e-34 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070000 [exp] 219 / 3e-69 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 216 / 7e-68 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G116500 [exp] 203 / 9e-63 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.001G115800 [exp] 202 / 1e-62 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G082100 [exp] 165 / 4e-48 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G158200 [exp] 160 / 2e-46 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.003G090900 [exp] 155 / 9e-44 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.001G143500 [exp] 152 / 1e-42 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 148 / 2e-41 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031696 [exp] 221 / 5e-69 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 204 / 6e-63 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10031118 [exp] 200 / 1e-62 AT4G25320 231 / 2e-74 AT hook motif DNA-binding family protein (.1) Lus10015027 [exp] 195 / 1e-59 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10030269 [exp] 181 / 4e-54 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004022 [exp] 174 / 3e-51 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10004318 [exp] 170 / 7e-50 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10037858 [exp] 162 / 1e-46 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10030381 [exp] 157 / 6e-45 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10011067 [exp] 147 / 7e-41 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [poplar] [flax] ALDC PF03479 [poplar] [flax] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Potri.012G129500.1 pacid=42782842 polypeptide=Potri.012G129500.1.p locus=Potri.012G129500 ID=Potri.012G129500.1.v4.1 annot-version=v4.1 ATGATCTATGAAGTGATGGAGGCAAAAGAAGGAATAGCAGTAAGTTCAGGTGTAACAGTTAAGGCAGAAGAAGCTCCTGATGGCTTCAGGGTGGCACCCA GAAATGAAAATTCTAGCCCTAGTCCAAACCCAAACCCGAACCCAAACCAGAACAATAACCATAACCCGAACCCGAACTCTAACTCTAACTCTAACTCGAA CCCTAGTCCAAACCCTGATCCCGGACAGCTTGGTGCCCCACAGGTGGGTGCCTCTCCTGTGAGTGCGGTCGGTACTGATACTGCGGGCAAGAAGAAAAGG GGGAGGCCTAGAAAGTATGCCCCTGATGGTACTTTAGCTCTAGCGTTGTCACCAATGCCAATATCGTCCTCTATTCCGCTTACCGGAGACTATTATGCAT GGAAAAGGGGTAGAGGGCGGCCACTGGAGTCAGTGAAGAAGCAACATAATTATGAATATGAGAGCACAGGTGACAAAATTGCATACTTTGTTGGCACTAA TTTCATGCCCCATGTGATCACTGTTAATGCTGGCGAGGATGTGACAATGAAGGTCATGTCCTTTTCGCAACAAGGAGCTCGTGCTATATGCATTCTTTCT GCAAATGGGACTATCTCTAATGTTACACTTCGTCAACCTACTTCTTCTGGTGGTACTCTAACATATGAGGGTCGTTTTGAGATACTTTCTTTATCTGGGT CATTTATGCCCTCTGAAAATGGAGGAACAAAGGGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGTGTTGTGGGGGGAGGACTTGC TGGTCTGCTGGTAGCTGCCGGTCCTGTGCAGGTTGTCGTGGGCAGTTTTCTACTAGGTCATCAGCAGGAGTCAAAGCACAAGAAGCAGAGAATTGAACCT GCACTGGCTGTCATTCCAGCTACTATTCCAGCTACAATCAATGTGATCTCCCCAGAAGAAATGAAGGGGTCTTATGGTGGAGTAAGACCTATTGCCATAC CATCTCCATTACATGGAGACAACCCAGCTTCTCTTAACCCCATGCAAGCCTAA
AA sequence Show only first row Show all	>Potri.012G129500.1 pacid=42782842 polypeptide=Potri.012G129500.1.p locus=Potri.012G129500 ID=Potri.012G129500.1.v4.1 annot-version=v4.1 MIYEVMEAKEGIAVSSGVTVKAEEAPDGFRVAPRNENSSPSPNPNPNPNQNNNHNPNPNSNSNSNSNPSPNPDPGQLGAPQVGASPVSAVGTDTAGKKKR GRPRKYAPDGTLALALSPMPISSSIPLTGDYYAWKRGRGRPLESVKKQHNYEYESTGDKIAYFVGTNFMPHVITVNAGEDVTMKVMSFSQQGARAICILS ANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPSENGGTKGRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLLGHQQESKHKKQRIEP ALAVIPATIPATINVISPEEMKGSYGGVRPIAIPSPLHGDNPASLNPMQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62260	AT-hook		AT hook motif DNA-binding fami...		Potri.012G129500 [exp]	0	1
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.014G070000 [exp]	6.48	0.8229
AT4G14860	OFP	ATOFP11	ovate family protein 11 (.1)		Potri.005G211300 [exp]	6.70	0.8598
AT3G18170			Glycosyltransferase family 61 ...		Potri.015G042300 [exp]	11.53	0.8820
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.016G024400 [exp]	12.20	0.7693
AT1G03700			Uncharacterised protein family...		Potri.019G100300 [exp]	13.34	0.8816
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Potri.014G113100 [exp]	19.51	0.8751
AT3G05220			Heavy metal transport/detoxifi...		Potri.007G021200 [exp]	21.81	0.8600
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.005G148400 [exp]	24.00	0.8495
AT3G54070			Ankyrin repeat family protein ...		Potri.006G062700 [exp]	25.49	0.8456
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.004G215100 [exp]	29.54	0.8551

Compare expression of checked genes

Potri.012G129500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.