Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25370 248 / 2e-83 Double Clp-N motif protein (.1) AT4G12060 216 / 6e-71 Double Clp-N motif protein (.1) AT5G50920 57 / 2e-09 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 56 / 6e-09 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT3G45450 45 / 2e-05 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131700 [exp] 384 / 3e-137 AT4G25370 243 / 1e-81 Double Clp-N motif protein (.1) Potri.001G115500 [exp] 210 / 2e-68 AT4G12060 226 / 2e-74 Double Clp-N motif protein (.1) Potri.012G105900 [exp] 57 / 2e-09 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 57 / 2e-09 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G112000 [exp] 45 / 3e-05 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031694 [exp] 218 / 1e-71 AT4G12060 186 / 3e-59 Double Clp-N motif protein (.1) Lus10031116 [exp] 209 / 4e-68 AT4G12060 176 / 4e-55 Double Clp-N motif protein (.1) Lus10006663 [exp] 171 / 5e-53 AT4G12060 179 / 5e-56 Double Clp-N motif protein (.1) Lus10007005 [exp] 167 / 6e-52 AT4G12060 181 / 5e-57 Double Clp-N motif protein (.1) Lus10043198 [exp] 59 / 1e-10 AT5G50920 266 / 3e-83 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032543 [exp] 59 / 2e-10 AT5G50920 265 / 9e-83 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10036017 [exp] 57 / 2e-09 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 57 / 4e-09 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [poplar] [flax] Clp_N Clp amino terminal domain, pathogenicity island component
Representative CDS sequence Show only first row Show all	>Potri.012G129800.3 pacid=42784060 polypeptide=Potri.012G129800.3.p locus=Potri.012G129800 ID=Potri.012G129800.3.v4.1 annot-version=v4.1 ATGGCTTCTAACACCATCTCATTTCTCCCAATTCCAATCTCCACCTCTCAATTTTGCAATGAAAAACCACATAATTCTTCACTCTTGCCACTCCCTTTAA GCTCCTTTTATGGCAACAAGCTATTGATTTCACACTCAAAGTTGAGAACTTTATCTCTTAAGGGAAATAAGCCATCAACGAATGTCACAGTTTTATCTAC TCTACCCACCAAGAAGTATACATCTCAGAAGATACCAAAATGGTCAGCAAGAGCGATAAGGTCATTTGGGTTAGGAGAACTGGAGGCGAGGAAGTTGAAG TATCCTAATACGGGAACTGATGCACTTTTAATGGGGATTTTGATTGAGGGGACTAGTCCAGCTGCAAAGTTTTTGAGGGCTAATGGGATTACTTTTTTCA AAGTCAGAGAAGAAACTGTGAATTTACTTGGGAAATCTGAAATGTATTTTTTTAGTCCTGAGCATCCTCCATTGACTGAACAAGCTCAAAGAGCACTTGA TTGGGCTGTTGAGGAGAAACTAAAGTCAGGAGATAGTGGAGAAATTACCACAACTCATATACTTCTGGGGACATGGTCAGAAAAAGAATCTGCAGGCTGC AAGATATTGGAAACTTTAGGTTTTAATGACGATAAAGCTAAAGAAGTCGCAGAATCTATGAACGGAGATGTTGCCCTGAGCTTCAAGTAG
AA sequence Show only first row Show all	>Potri.012G129800.3 pacid=42784060 polypeptide=Potri.012G129800.3.p locus=Potri.012G129800 ID=Potri.012G129800.3.v4.1 annot-version=v4.1 MASNTISFLPIPISTSQFCNEKPHNSSLLPLPLSSFYGNKLLISHSKLRTLSLKGNKPSTNVTVLSTLPTKKYTSQKIPKWSARAIRSFGLGELEARKLK YPNTGTDALLMGILIEGTSPAAKFLRANGITFFKVREETVNLLGKSEMYFFSPEHPPLTEQAQRALDWAVEEKLKSGDSGEITTTHILLGTWSEKESAGC KILETLGFNDDKAKEVAESMNGDVALSFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	0	1
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Potri.009G089300 [exp]	1.41	0.9849	Pt-CLPR1.1
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Potri.004G016900 [exp]	1.73	0.9767	Pt-LAF6.1
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.008G012500 [exp]	3.46	0.9732	NAP7.2
AT1G09130			ATP-dependent caseinolytic (Cl...		Potri.013G017166 [exp]	4.47	0.9787
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Potri.011G024100 [exp]	5.47	0.9657
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	5.74	0.9689
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Potri.013G078600 [exp]	7.21	0.9670
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Potri.013G077000 [exp]	7.34	0.9607
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Potri.003G083300 [exp]	7.48	0.9749
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Potri.014G146900 [exp]	7.48	0.9711

Compare expression of checked genes

Potri.012G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.