Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22820 121 / 1e-35 A20/AN1-like zinc finger family protein (.1.2) AT4G12040 117 / 6e-34 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT1G12440 115 / 3e-33 A20/AN1-like zinc finger family protein (.1.2) AT2G36320 101 / 1e-27 A20/AN1-like zinc finger family protein (.1) AT4G14225 99 / 3e-27 A20/AN1-like zinc finger family protein (.1) AT2G27580 96 / 8e-26 A20/AN1-like zinc finger family protein (.1.2) AT4G25380 95 / 9e-26 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1) AT3G52800 86 / 2e-21 A20/AN1-like zinc finger family protein (.1) AT1G51200 85 / 3e-21 A20/AN1-like zinc finger family protein (.1.2.3.4) AT3G12630 79 / 6e-19 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131900 [exp] 193 / 3e-64 AT4G22820 123 / 2e-36 A20/AN1-like zinc finger family protein (.1.2) Potri.012G130100 [exp] 164 / 1e-52 AT4G22820 114 / 7e-33 A20/AN1-like zinc finger family protein (.1.2) Potri.015G131500 [exp] 163 / 2e-52 AT4G22820 114 / 3e-33 A20/AN1-like zinc finger family protein (.1.2) Potri.001G115000 [exp] 118 / 3e-34 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.003G117100 [exp] 108 / 3e-30 AT1G12440 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2) Potri.009G144100 [exp] 101 / 8e-28 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.007G078500 [exp] 99 / 5e-27 AT4G12040 120 / 6e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.016G051700 [exp] 99 / 5e-27 AT1G51200 164 / 3e-52 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.006G056500 [exp] 99 / 9e-27 AT1G51200 167 / 2e-53 A20/AN1-like zinc finger family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030150 [exp] 130 / 2e-39 AT4G12040 119 / 8e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Lus10006671 [exp] 115 / 4e-33 AT1G12440 204 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10007015 [exp] 114 / 9e-33 AT1G12440 207 / 3e-69 A20/AN1-like zinc finger family protein (.1.2) Lus10003246 [exp] 111 / 1e-31 AT2G36320 201 / 3e-67 A20/AN1-like zinc finger family protein (.1) Lus10008912 [exp] 104 / 6e-29 AT1G12440 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2) Lus10028903 [exp] 104 / 6e-29 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10031833 [exp] 102 / 3e-28 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10035603 [exp] 97 / 3e-26 AT2G36320 152 / 3e-48 A20/AN1-like zinc finger family protein (.1) Lus10031262 [exp] 96 / 1e-25 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10020594 [exp] 87 / 5e-22 AT2G36320 149 / 2e-46 A20/AN1-like zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01428 [poplar] [flax] zf-AN1 AN1-like Zinc finger PF01754 [poplar] [flax] zf-A20 A20-like zinc finger
Representative CDS sequence Show only first row Show all	>Potri.012G130000.1 pacid=42783748 polypeptide=Potri.012G130000.1.p locus=Potri.012G130000 ID=Potri.012G130000.1.v4.1 annot-version=v4.1 ATGGATTCACAAAGCAATTTGAATCCTCCTTTGTGTGCTAAGGGTTGTGGGTTCTTTGGCTCTCCAGAGAAGAAGAATTTGTGTTCAGAGTGTTACAGAG ACTATGTCAAAGAAGAAGAGTCCGTTGCTGCCGAGACTGCCAAGAAACTCTCTCAACTTGTGATCAATACCCCATCTGCTGCTAATGATAAGAGCCCAGC TGTTTTAACTGATGAAACAACTTCAAGTTCAGCCGCCGCCGCCGCCGCTGCATCCTCTTCAACAGTAAAGATTAATAGATGCGAATGCTGCAACAAGAAA GTTGGATTGCTGGGGTTCAAGTGCCGCTGTGAGAAGACCTTCTGTGGGGTTCATCGACATGCCACGGAGCACTCTTGCACCTTTGATTTCAAGACTCTTG GTCGACATATTTTGGCCGAGCAAAACCCACTTGTTGTTTCTGATAAGCTTCATACTAGAATCTGA
AA sequence Show only first row Show all	>Potri.012G130000.1 pacid=42783748 polypeptide=Potri.012G130000.1.p locus=Potri.012G130000 ID=Potri.012G130000.1.v4.1 annot-version=v4.1 MDSQSNLNPPLCAKGCGFFGSPEKKNLCSECYRDYVKEEESVAAETAKKLSQLVINTPSAANDKSPAVLTDETTSSSAAAAAAASSSTVKINRCECCNKK VGLLGFKCRCEKTFCGVHRHATEHSCTFDFKTLGRHILAEQNPLVVSDKLHTRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22820			A20/AN1-like zinc finger famil...		Potri.012G130000 [exp]	0	1
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.005G093800 [exp]	1.00	0.9184
AT1G30760			FAD-binding Berberine family p...		Potri.011G158800 [exp]	8.48	0.8756
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Potri.008G180800 [exp]	8.71	0.8781
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006100 [exp]	11.40	0.8764
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.014G080900 [exp]	12.60	0.8885
					Potri.012G080700 [exp]	15.87	0.8703
					Potri.007G031650 [exp]	18.00	0.7594
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Potri.005G111100 [exp]	19.07	0.8744
AT4G21780			unknown protein		Potri.011G000400 [exp]	23.21	0.8095
AT5G55140			ribosomal protein L30 family p...		Potri.010G076275 [exp]	24.45	0.7219

Compare expression of checked genes

Potri.012G130000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.