Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22860 164 / 2e-45 Cell cycle regulated microtubule associated protein (.1.2) AT5G07170 130 / 8e-34 Cell cycle regulated microtubule associated protein (.1) AT4G11990 130 / 3e-33 Cell cycle regulated microtubule associated protein (.1) AT5G62240 84 / 2e-17 Cell cycle regulated microtubule associated protein (.1) AT1G03780 66 / 3e-11 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117800 [exp] 170 / 2e-47 AT4G22860 377 / 8e-126 Cell cycle regulated microtubule associated protein (.1.2) Potri.001G114400 [exp] 150 / 2e-40 AT4G22860 353 / 4e-117 Cell cycle regulated microtubule associated protein (.1.2) Potri.007G138600 [exp] 57 / 1e-08 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.017G013100 [exp] 51 / 1e-06 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031109 [exp] 152 / 8e-42 AT5G07170 124 / 6e-31 Cell cycle regulated microtubule associated protein (.1) Lus10031690 [exp] 149 / 1e-40 AT4G22860 117 / 2e-29 Cell cycle regulated microtubule associated protein (.1.2) Lus10007022 [exp] 142 / 1e-38 AT4G22860 209 / 3e-63 Cell cycle regulated microtubule associated protein (.1.2) Lus10006677 [exp] 120 / 2e-29 AT4G22860 345 / 5e-113 Cell cycle regulated microtubule associated protein (.1.2) Lus10018608 [exp] 70 / 1e-12 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 67 / 1e-11 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 45 / 7e-05 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10033674 [exp] 44 / 0.0002 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12214 [poplar] [flax] TPX2_importin Cell cycle regulated microtubule associated protein
Representative CDS sequence Show only first row Show all	>Potri.012G130300.1 pacid=42784157 polypeptide=Potri.012G130300.1.p locus=Potri.012G130300 ID=Potri.012G130300.1.v4.1 annot-version=v4.1 ATGGATATAGAAATGGAAACGGAAGAAGAATTCGTTGCTGTTGAACCAATCTGGGTCCGAGACGTTGATGGTGATGATGCTGATTTCGATATTGATTACG AGTTTGATGCTTCAAAATGTTATGATTTTTCGAGGCAAGAAACAGAATTGGAGGCTCAAGAATCTGAATTTTGGTTTGAAATTGCACCAAGTTATCCTCC TTCACCTTTTGCTATAAAGGCTAAACGGAGACCAAGTTTTGCCTCCTTGGAACCTGCAGAAATTTCAACAGATCATAATAATTATATAGGATTAGAATCT GATAATCAGATAGTTCAAGATATTGCAAAAGCTGAAGCCAAGTCCCCAGTGAAGTCACCACGATCGAAAAATTCTTTTATGAATCCTACAGCAAGTCAGC TGGCCAAGAAAAATTGCTGGCCGGAAAATCATTGCAATCGATTGATCAGAAGGTTTACCAAGTTCTCAGTGGAAAATGAAGAGAAAAATTCAAAGGGCTC TTCTGTTATTGGAAACCAAGCTACCAAAAGGCAAAAGCTCGAGTCTGGTTACTTGCGCAAGGTTGCTTGTTTGAAGCATCAAGCACTCTTTCAGCACAAG GAACCGAAAAAGGTTGATGAAAGACCCACATTTGGCAGAACAAAAGCCACAATTCCCAGAGAACCTATACTTAGAACATCTTATAGGGCAGAAAGACACA GGTCTAAGCTTAATTTAGAGTCTGATGAAAATGCGAAACCAAATGCTTCTTGTGCTTTTAAAGCAAGGCCATTGAACAGAAAAATTCTCAGGGCTCCTTC ATTCCCTCTTCCTAGAAAAAGCGCTCCACAACGGCCAGAATTTCAAGTTTTTCACCTGAGGACATTGGAGAGAGCAAGGACATCGGAGAGGGCTGCTACG CAACGTTCATCTATTAATAATGCAGCAAATGTATCTAATTCTAATCCTATTTCACAAAATGGAACCACAGACTCTAGAAGTATGATACTTGTTAAGAAGT TACATCCCTTTCAAAGAGAAAAGTCCAATTCTACCTTGAAGGAGAAATCAGAAGCCCTTGATAAATTTAAACCGCGCTGCCTTAATAGAAAGGAACCAAA TTCTCCGACTAAGAGGTTTCGGATGAACCTCACGATAGAATCATTTAGTAAGCTCTCCCTGGCATCTGAAGTCCATTCTAATGCAAATGCTCAGACAAAA TTGCCATTGCAGTATAGGGGCTCGAAAGAGAATGCACCAGGCTGTTTGAACCTATAA
AA sequence Show only first row Show all	>Potri.012G130300.1 pacid=42784157 polypeptide=Potri.012G130300.1.p locus=Potri.012G130300 ID=Potri.012G130300.1.v4.1 annot-version=v4.1 MDIEMETEEEFVAVEPIWVRDVDGDDADFDIDYEFDASKCYDFSRQETELEAQESEFWFEIAPSYPPSPFAIKAKRRPSFASLEPAEISTDHNNYIGLES DNQIVQDIAKAEAKSPVKSPRSKNSFMNPTASQLAKKNCWPENHCNRLIRRFTKFSVENEEKNSKGSSVIGNQATKRQKLESGYLRKVACLKHQALFQHK EPKKVDERPTFGRTKATIPREPILRTSYRAERHRSKLNLESDENAKPNASCAFKARPLNRKILRAPSFPLPRKSAPQRPEFQVFHLRTLERARTSERAAT QRSSINNAANVSNSNPISQNGTTDSRSMILVKKLHPFQREKSNSTLKEKSEALDKFKPRCLNRKEPNSPTKRFRMNLTIESFSKLSLASEVHSNANAQTK LPLQYRGSKENAPGCLNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22860			Cell cycle regulated microtubu...		Potri.012G130300 [exp]	0	1
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.004G168800 [exp]	4.24	0.8730	VCCYP.1
AT1G79760		DTA4	downstream target of AGL15-4 (...		Potri.001G189400 [exp]	4.47	0.8732	DTA4.1
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Potri.013G028900 [exp]	9.16	0.8089
AT3G17365			S-adenosyl-L-methionine-depend...		Potri.010G153200 [exp]	9.79	0.8653
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.010G031500 [exp]	12.64	0.8579	Pt-NHX1.1
AT5G43530			Helicase protein with RING/U-b...		Potri.003G083400 [exp]	20.12	0.8133
AT5G62880		ARAC10, ATRAC10...	RHO-RELATED PROTEIN FROM PLANT...		Potri.012G077800 [exp]	20.97	0.8129
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103100 [exp]	29.66	0.7950
AT5G26670			Pectinacetylesterase family pr...		Potri.010G004400 [exp]	31.81	0.7565
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.002G135600 [exp]	33.46	0.8225

Compare expression of checked genes

Potri.012G130300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.