Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62220 626 / 0 ATGT18 glycosyltransferase 18 (.1) AT2G20370 324 / 6e-104 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT4G13990 318 / 8e-103 Exostosin family protein (.1) AT2G29040 317 / 2e-100 Exostosin family protein (.1) AT2G32750 310 / 5e-100 Exostosin family protein (.1) AT1G63450 309 / 8e-98 RHS8 root hair specific 8 (.1) AT5G41250 289 / 4e-91 Exostosin family protein (.1) AT2G32740 285 / 2e-90 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT1G68470 283 / 5e-90 Exostosin family protein (.1) AT2G31990 281 / 6e-89 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G132600 [exp] 846 / 0 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.009G032500 [exp] 328 / 6e-105 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 321 / 1e-103 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 321 / 4e-103 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.001G321000 [exp] 316 / 6e-102 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 300 / 4e-95 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.001G381900 [exp] 286 / 6e-91 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G382200 [exp] 286 / 6e-91 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G120800 [exp] 241 / 7e-74 AT4G22580 593 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031685 [exp] 644 / 0 AT5G62220 622 / 0.0 glycosyltransferase 18 (.1) Lus10027386 [exp] 643 / 0 AT5G62220 621 / 0.0 glycosyltransferase 18 (.1) Lus10015022 [exp] 627 / 0 AT5G62220 624 / 0.0 glycosyltransferase 18 (.1) Lus10016532 [exp] 350 / 4e-115 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 347 / 5e-113 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 341 / 8e-111 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10022862 [exp] 323 / 1e-103 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10024961 [exp] 320 / 2e-102 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10006694 [exp] 311 / 2e-99 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10000604 [exp] 306 / 1e-97 AT1G63450 625 / 0.0 root hair specific 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.012G130700.2 pacid=42784104 polypeptide=Potri.012G130700.2.p locus=Potri.012G130700 ID=Potri.012G130700.2.v4.1 annot-version=v4.1 ATGTTTCCACTCTCAAATCCTTCATCTTCACCTGAATCCCAAATCAAGAAACCAAAAACTCCACTTGATGTCCGAAGAAAAGACTCTTTCAGGTCACCTA AAGCGTTTCTTGCTGCTCATTACCCTTCCATAAACCAACCTCGGTTATGCCTTTTCCTTTCCATCTTCTTCATTCAAATCCTCCTCCTCCTCGCTCTCCG CTCCATTCCTCGTTCTTTCCATCATCGCCTCCACCACTTCCCGGCTCCCGTCACTGCCCACCACCACCTCACTCCAATCCTCACCACCACCACCGCCTCG TTCTCCGCCAGCACAGTGAAAGAGGAGAATTCCTGCGAGTTTGGTGAAATCTTTGTCTACGATCTTCCGAGTGCTTTGAACCATGAAGTGGTTAACAACT GTGATGAATTGAACCCTTGGAGTTCGAGCTGTGATGCGTTGTCGAATAACGGATTTGGCCCTGTGGCCGCTGCAATTTCCAGCGTTGTACCGGAAAATCT TGCTGCTGCTTGGTACTGGACTGATCAGTTTGTCACTGAAGTTCTTTTCCACAACAGAATTTTGAATCATAAGTGTAGAACTAAAGACCCCAACAATGCG ACAGCCTTTTACATTCCATTCTACGTTGGACTCGCTGTCGGGAAATTTCTATGGCTCAAGAACTCATCCGCTAAAGAACGTGATTTTCACTGCGAGATGA TGCTCAAGTGGGTTCAAGACCAGCCGTATTTTACAAGAAATGATGGATGGGATCATTTCTTGACGATGGGAAGGATATCCTGGGATTTTAGACGGTCCAA GGACGAGGAATGGGGTTCGAGTTGCATTCACAAGCCAGGTATGCGAAACGTTACTCGCCTTTTGATCGAGCGAAATCCCTGGGATTATTTTGATGTTGGT GTTCCTTATCCTACGGGATTCCACCCTAGATCGGACAATGATGTTGTCGAATGGCAGGAATTTGTCCGAAATCGTAACAGGAAGAGTCTTTTCTGTTTTG CTGGTGCTAAACGTAGCAAAATCAAGGATGATTTTCGAGGGCTGCTGTTGAATCATTGTAGGAACGAGTCTGATTCATGCCGAGTTGTGGATTGTGCTGG TTCTAAATGTTCTAATGGAACTTCGATAATTCTTGAAACGTTCTTGGATTCTGTATTCTGTTTGCAGCCCAGGGGTGATAGTTTTACAAGAAGGTCGATT TTTGATTGTATGATTGCTGGTTCGATCCCGGTTTTGTTCTGGAAAAGAACTGCTTATGATCAGTATGAGTGGTTTTTGCCGGCTGAGCCAGAGAGCTATT CGGTGTTTATAGATCGAAATGAAGTGAAAAATGGGACTGCTTCTATTCGGAAAGTGCTTGAGAGGTACAGTGAGGATGAGATTAGGAGAATGAGGGAGAG AGTTATTGAATATATACCAAAGTTTTTGTATGCTAGACCCGATGAAGGTTTAGAGACTATAAAGGATGCTTTTGACGTTGCCATTGATGCGGTTTTGAGG AGGTTCAAAGAGCAAGAGCAACCTGGCTACAGGTGGTAG
AA sequence Show only first row Show all	>Potri.012G130700.2 pacid=42784104 polypeptide=Potri.012G130700.2.p locus=Potri.012G130700 ID=Potri.012G130700.2.v4.1 annot-version=v4.1 MFPLSNPSSSPESQIKKPKTPLDVRRKDSFRSPKAFLAAHYPSINQPRLCLFLSIFFIQILLLLALRSIPRSFHHRLHHFPAPVTAHHHLTPILTTTTAS FSASTVKEENSCEFGEIFVYDLPSALNHEVVNNCDELNPWSSSCDALSNNGFGPVAAAISSVVPENLAAAWYWTDQFVTEVLFHNRILNHKCRTKDPNNA TAFYIPFYVGLAVGKFLWLKNSSAKERDFHCEMMLKWVQDQPYFTRNDGWDHFLTMGRISWDFRRSKDEEWGSSCIHKPGMRNVTRLLIERNPWDYFDVG VPYPTGFHPRSDNDVVEWQEFVRNRNRKSLFCFAGAKRSKIKDDFRGLLLNHCRNESDSCRVVDCAGSKCSNGTSIILETFLDSVFCLQPRGDSFTRRSI FDCMIAGSIPVLFWKRTAYDQYEWFLPAEPESYSVFIDRNEVKNGTASIRKVLERYSEDEIRRMRERVIEYIPKFLYARPDEGLETIKDAFDVAIDAVLR RFKEQEQPGYRW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Potri.012G130700 [exp]	0	1
AT5G44670			Domain of unknown function (DU...		Potri.001G074600 [exp]	7.14	0.6586
AT3G17120			unknown protein		Potri.010G148200 [exp]	10.00	0.6384
AT5G49690			UDP-Glycosyltransferase superf...		Potri.010G182575 [exp]	13.41	0.6668
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.016G043400 [exp]	22.24	0.6170
AT3G06150			unknown protein		Potri.008G202400 [exp]	22.84	0.6250
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.019G071200 [exp]	32.18	0.6042	CYP749A2
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G127901 [exp]	38.34	0.6352
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019200 [exp]	38.88	0.6304
AT1G27340			Galactose oxidase/kelch repeat...		Potri.003G062000 [exp]	38.97	0.6339
					Potri.010G001200 [exp]	46.90	0.6179

Compare expression of checked genes

Potri.012G130700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.