Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PRH75.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62190 794 / 0 PRH75 DEAD box RNA helicase (PRH75) (.1) AT5G26742 334 / 3e-104 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G22330 308 / 1e-95 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 308 / 1e-95 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT1G31970 229 / 1e-66 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 228 / 4e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 226 / 4e-66 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 214 / 1e-60 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 213 / 8e-60 DEAD box RNA helicase family protein (.1.2) AT3G06480 214 / 1e-58 DEAD box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G133400 [exp] 1024 / 0 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.005G000500 [exp] 346 / 2e-108 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 340 / 3e-106 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.006G024100 [exp] 295 / 4e-91 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.016G023100 [exp] 288 / 3e-88 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.003G098800 [exp] 218 / 2e-62 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 218 / 3e-62 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 218 / 7e-61 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 217 / 2e-60 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027388 [exp] 892 / 0 AT5G62190 804 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10015020 [exp] 865 / 0 AT5G62190 778 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10038898 [exp] 851 / 0 AT5G62190 768 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10031683 [exp] 830 / 0 AT5G62190 748 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10001057 [exp] 345 / 2e-108 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10001425 [exp] 319 / 6e-99 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10027268 [exp] 312 / 1e-96 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 311 / 2e-96 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 295 / 3e-91 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10035410 [exp] 296 / 6e-91 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0221 [poplar] [flax] RRM PF08152 [poplar] [flax] GUCT GUCT (NUC152) domain
Representative CDS sequence Show only first row Show all	>Potri.012G131000.1 pacid=42783081 polypeptide=Potri.012G131000.1.p locus=Potri.012G131000 ID=Potri.012G131000.1.v4.1 annot-version=v4.1 ATGCCTTCTTTATCTCTTACTAGCAACAACAGCCCTGTGGATCCCAAGAAAGAAAAGAAGATGAAGAAGAAAATAGTTCTTGAGACCCAAGAAACTGATC CTTTGATGGTTTCTAGCAAGAAAGAGAAGAAGAAAGAGAAGAGAAAAGCTGTAGAATTTGATGATGATGATGAGGAGAGGAGTGAAACCAGCTCAGAGCT TGGTGAGCCTGTGAATTTGAAGAAGAAAAGCAAGAAAGCTAAGGTTGTTGAAGAGGAGGAAGATGAAGAGGAGGTTAAAGCTGAGGATCCTAATGCAGTT ACCAGGTTTAGGATATCTGAACCGTTGAGGGAAGCGTTGAAGAAGAGAGGGATTGAGGCTTTGTTTCCTATTCAAGCTAGGACTTTTGAGGATATTCTTA ATGGGTGTGATTTGGTTGGCCGAGCAAGGACCGGGCAGGGTAAAACATTGGCTTTTGTTTTGCCAATTTTGGAGTCACTAGTAAACGGGCCTGCAAAAGC ATCAAGGAAGACAGGCTATGGAAGGCCACCAAGTGTTTTGGTACTTTTACCTACCAGGGAACTGGCCACTCAGGTGTTTGAAGATTTCAAAGTTTATGGT GGAGCAGTGGGCTTGAATTCTTGCTGTGTATATGGAGGAGCTTCATACCAGCCTCAAGAATTTGCCTTGAAGAGAGGGGTGGATATAGTTGTGGGAACAC CTGGCCGCATAAAGGATCACATAGAGAAGGGCAACATTGACTTAAGCTTATTAAAGTTTCGGGTCCTTGATGAGTCTGATGAAATGCTGAGGATGGGTTT TGTTGAAGATGTTGAACTTATTCTAGGAAAGGTAGAGGATGTAAGAAAAGTTCAAACACTTCTATTCAGTGCCACCTTGCCAGATTGGGTGAAAAATATT TCTTCTAGGTTTCTCAAGCCAACTAAGAAAACTATTGATCTTGTTGGTAATGAGAAAATGAAAGCCAGCACCAATGTAAGGCATATTGTACTTCCCTGTT CTACTGCTGCCATGCCTCAGGTTATTCCTGATGTCATAAGTTGTTATGGCAGCGGAGGCCGTACAATTATTTTCACAGAGAAAAGGGAATCCGCAAATGA ACTTGCTGGATTATTGCCTGGAGCACGGGCTTTACATGGGGAAATACAGCAGTCTAAACGTGAGGTGACCCTTTCTGGGTTCAGGTCTGGCAAATTCCTG ACCTTGGTGGCTACAAATGTGGCTGCAAGAGGATTGGATATCAATGATGTGCAGTTAATCATCCAGTGTGAACCTCCAAATGATGTAGAAGCTTATATAC ATCGGTCTGGACGTACTGGACGAGCAGGCAATAGTGGTGTTGCTGTGATGCTCTATGATCCAAGAAGGTCAAATATATCTAAGATTCAAAGAGAATCAGG TGTCAAATTTGAGCATATAACTGCCCCCCGGGCTGAGGATATTGCCAAAGCAGCTGGCGTGGGAGCTGCAGAAACAATAACTCAGGTTTCTGACAGTGTA ATTCCAGCATTCAAATCTGCAGCAGAGAATCTGTTGAGTACCTCAGGTTTGTCAGCTGTAGAACTACTTGCAAAAGCACTTGCCAAGGCTACTGGTTATA CTGAGATCAAGAGTAGGTCACTGCTAACTTCCATGGACAACCATGTAACTTTACTTCTTGAATCTGGCAAACCCATTTACACTCCATCATTTGCTTTTAG TGTCATGAGGAGAATCTTGCCTGAGGATAAGGTTGAGTCAGTGACGGGCATGAGCCTCACAGCTGATGGAAATGGTGCAGTTTTTGATGTCAAGAAAGAA GACGTTGATACTTTCCTAGCTGCTCAGGAAAATGCTGCTGGTGTGAACATAGAGGTGGTTAAAGCATTGCCTTCTTTGCAAGAAAGAGACCGACCAAGGG GTAGATTTGGTGGTGGTGGTGGTGGTGGTGGTCGTGGTAGAGGTGGTTTTGGTGATAGGAGTGGTGGTAATAGGTTCTCAGGGGGAAGAGGTGGCAGGGG TGGTGGGTTCTCAGATAGAAGAAATGGCTCTGGTGGCTTTCAAGGTCGCAACAATGGGAACAAGTGGTGA
AA sequence Show only first row Show all	>Potri.012G131000.1 pacid=42783081 polypeptide=Potri.012G131000.1.p locus=Potri.012G131000 ID=Potri.012G131000.1.v4.1 annot-version=v4.1 MPSLSLTSNNSPVDPKKEKKMKKKIVLETQETDPLMVSSKKEKKKEKRKAVEFDDDDEERSETSSELGEPVNLKKKSKKAKVVEEEEDEEEVKAEDPNAV TRFRISEPLREALKKRGIEALFPIQARTFEDILNGCDLVGRARTGQGKTLAFVLPILESLVNGPAKASRKTGYGRPPSVLVLLPTRELATQVFEDFKVYG GAVGLNSCCVYGGASYQPQEFALKRGVDIVVGTPGRIKDHIEKGNIDLSLLKFRVLDESDEMLRMGFVEDVELILGKVEDVRKVQTLLFSATLPDWVKNI SSRFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTAAMPQVIPDVISCYGSGGRTIIFTEKRESANELAGLLPGARALHGEIQQSKREVTLSGFRSGKFL TLVATNVAARGLDINDVQLIIQCEPPNDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSNISKIQRESGVKFEHITAPRAEDIAKAAGVGAAETITQVSDSV IPAFKSAAENLLSTSGLSAVELLAKALAKATGYTEIKSRSLLTSMDNHVTLLLESGKPIYTPSFAFSVMRRILPEDKVESVTGMSLTADGNGAVFDVKKE DVDTFLAAQENAAGVNIEVVKALPSLQERDRPRGRFGGGGGGGGRGRGGFGDRSGGNRFSGGRGGRGGGFSDRRNGSGGFQGRNNGNKW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Potri.012G131000 [exp]	0	1	Pt-PRH75.1
AT2G29200		APUM1	pumilio 1 (.1)		Potri.008G058300 [exp]	3.31	0.8223
AT5G49630		AAP6	amino acid permease 6 (.1)		Potri.002G112100 [exp]	3.46	0.7709	Pt-AAP1.2
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Potri.016G015100 [exp]	9.89	0.7524
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.001G298700 [exp]	10.48	0.7389
AT3G57910			D111/G-patch domain-containing...		Potri.016G048600 [exp]	12.00	0.7388
AT2G38450			unknown protein		Potri.010G182400 [exp]	12.24	0.6898
AT3G13682		LDL2	LSD1-like2 (.1)		Potri.011G127600 [exp]	12.32	0.7736
AT1G04850			ubiquitin-associated (UBA)/TS-...		Potri.017G056900 [exp]	14.28	0.6898
AT3G54440			glycoside hydrolase family 2 p...		Potri.001G027400 [exp]	19.79	0.7606
AT3G53690			RING/U-box superfamily protein...		Potri.018G064400 [exp]	21.63	0.7474

Compare expression of checked genes

Potri.012G131000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.