Plant FIBer expression Database

Potri.012G131100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51740 565 / 0 Peptidase family M48 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038897
[exp]
571 / 0 AT5G51740 501 / 1e-176 Peptidase family M48 family protein (.1)
Lus10015019
[exp]
550 / 0 AT5G51740 498 / 4e-175 Peptidase family M48 family protein (.1)
Lus10031682
[exp]
109 / 5e-29 AT5G51740 107 / 4e-29 Peptidase family M48 family protein (.1)
Lus10032437
[exp]
83 / 2e-19 AT5G51740 81 / 1e-19 Peptidase family M48 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF01435 Peptidase_M48 Peptidase family M48
Representative CDS sequence
>Potri.012G131100.1 pacid=42783563 polypeptide=Potri.012G131100.1.p locus=Potri.012G131100 ID=Potri.012G131100.1.v4.1 annot-version=v4.1
ATGGGGTGTTACAGGAAAGCAAAACTAGCTCTTGATGCTTTGACAAGCTACACGTCGAAGATTGTTACAAGACCTTCAGTTGAAGAATCAGCTTTCTCAA
GAATTTATCAAGATGGGTCTTTGAGTTCTGCTTCAAATCCAGTTAAGTTTTCTGGGTTCTCAAAAAGTTGTAATTTTTATCAAAGATTGGGGTCTGGTTC
TCAAATGGGTGTTAATAAAATTAATTATAATCCTTTTCTTGGTAATGGTATCGGTGCAAAGAGATTTTATTATGTTGATAGGTATCGTGTACAACATTTT
AAGCCTAGAGGGCCTAAGAGGTGGTTTAGGAATCCAAGAACTGTTTTGATTGTTGTTTTGGTTGGTTCTGGTGCTTTTATTACTGTTTATTATGGTAATT
TAGAGACTGTACCTTATACAAAAAGAAGGCATTTTGTGCTTTTGTCAAAGACAATGGAGAGGAAGATGGGTGAGACTCAGTTTGAGCAAATGAAAGCGGC
TTTTAAGGGGAAGATGTTGCCTGCATTACACCCTGAAAGTGTTAGGATGCGTTTGATTGCACAGGATATTATTGATGCTTTGCAAAGAGGGTTGAAGCGT
GAGCAAGTTTGGAGTGATATGGGGTATGCATCGCAGGAGAGTGATATGGCGCATGAGGCAAGTGCTCATGAGACTTTGAAGGCTTTGAGTGAGAGAGAAG
AGAAAATTGAGGGGAAGTGGTATAAAGAAGATGAAATTCTTGATGATAATTGGGTTCAACAATGTAGAAAGAAAGAGAAAGGGTTGAAGGCAGATGCTTC
GCATCTGGATGGATTGAATTGGGAGATCTTGGTTGTTAATGAGCCTGTTGTTAATGCTTTTTGTTTGCCAGGGGGGAAGATTGTTGTGTTTACTGGATTG
CTTGAGCATTTTAGAACTGATGCAGAGATAGCTACCATTATTGGGCACGAGGTCGGGCATGCTGTGGCACGACATGCAGCAGAAGGAATCACAAAGAATT
TGTGGGTTGCCATTTTGCAACTCATTTTGTACCAGTTTATCATGCCTGATATTGCAAATGCAATGTCGGTTCTGTTTTTGAGGCTACCTTTCTCCCGAAG
GATGGAGATTGAAGCAGATTATGTTGGATTATTATTGATGGCTTCTGCAGGATATGATCCTCGCATAGCACCTAGAGTGTATGAGAAATTGGGAAAGCTC
ACCGGAGATTCAGCACTCAGAGATTATCTTTCTACCCATCCATCTGGAAAGAGGAGAGCTCAATTGCTTGCCCAAGCTCAAGTCATGGAAGAAGCACTTC
ATATTTACAGAGACAGGATAGCAGGACGTGGGGATGAAGGTTTTTTCCTTTAA
AA sequence
>Potri.012G131100.1 pacid=42783563 polypeptide=Potri.012G131100.1.p locus=Potri.012G131100 ID=Potri.012G131100.1.v4.1 annot-version=v4.1
MGCYRKAKLALDALTSYTSKIVTRPSVEESAFSRIYQDGSLSSASNPVKFSGFSKSCNFYQRLGSGSQMGVNKINYNPFLGNGIGAKRFYYVDRYRVQHF
KPRGPKRWFRNPRTVLIVVLVGSGAFITVYYGNLETVPYTKRRHFVLLSKTMERKMGETQFEQMKAAFKGKMLPALHPESVRMRLIAQDIIDALQRGLKR
EQVWSDMGYASQESDMAHEASAHETLKALSEREEKIEGKWYKEDEILDDNWVQQCRKKEKGLKADASHLDGLNWEILVVNEPVVNAFCLPGGKIVVFTGL
LEHFRTDAEIATIIGHEVGHAVARHAAEGITKNLWVAILQLILYQFIMPDIANAMSVLFLRLPFSRRMEIEADYVGLLLMASAGYDPRIAPRVYEKLGKL
TGDSALRDYLSTHPSGKRRAQLLAQAQVMEEALHIYRDRIAGRGDEGFFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G51740 Peptidase family M48 family pr... Potri.012G131100
[exp]
0 1
AT4G04614 unknown protein Potri.005G213000
[exp]
3.16 0.6935
AT5G49400 zinc knuckle (CCHC-type) famil... Potri.010G142400
[exp]
10.00 0.6720
AT4G35240 Protein of unknown function (D... Potri.009G142900
[exp]
10.53 0.5786
AT1G16210 unknown protein Potri.009G140200
[exp]
11.61 0.6608
AT3G51650 unknown protein Potri.016G133700
[exp]
12.24 0.6971
AT3G12830 SAUR-like auxin-responsive pro... Potri.005G096400
[exp]
21.54 0.5608
AT4G13110 BSD domain-containing protein ... Potri.008G199000
[exp]
21.63 0.6223
AT5G58020 unknown protein Potri.006G186900
[exp]
21.63 0.6730
AT3G51770 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODU... Potri.016G123800
[exp]
22.49 0.5996
AT4G12780 Chaperone DnaJ-domain superfam... Potri.014G197600
[exp]
22.97 0.6598

Potri.012G131100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.