Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44890 511 / 7e-178 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT2G45510 511 / 9e-178 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT1G69500 363 / 1e-119 CYP704B1 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) AT5G23190 301 / 1e-95 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 294 / 2e-93 Cytochrome P450 superfamily protein (.1) AT3G56630 289 / 2e-91 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 286 / 2e-90 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT1G24540 275 / 7e-86 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT3G48520 271 / 3e-84 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT1G01600 269 / 4e-83 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072000 [exp] 572 / 0 AT2G45510 706 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072300 [exp] 561 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072100 [exp] 546 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.008G088900 [exp] 369 / 5e-122 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Potri.016G031700 [exp] 294 / 2e-93 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.007G072100 [exp] 288 / 3e-90 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 283 / 2e-88 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.010G050100 [exp] 280 / 1e-87 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.006G033600 [exp] 279 / 1e-87 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015018 [exp] 678 / 0 AT2G45510 586 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10038896 [exp] 652 / 0 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10009232 [exp] 530 / 3e-179 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037999 [exp] 511 / 2e-176 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037157 [exp] 362 / 5e-119 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10036772 [exp] 360 / 2e-118 AT1G69500 863 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 305 / 5e-97 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 301 / 2e-95 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 268 / 1e-82 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 261 / 2e-80 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.012G131200.2 pacid=42783178 polypeptide=Potri.012G131202.1.p locus=Potri.012G131200 ID=Potri.012G131200.2.v4.1 annot-version=v4.1 ATGCTGTTTCTTCTTGTGGGATTTTATGTCTCTCCCTCTATTATCTTAGGCCTAATAGGAATACTGATAGTTTTTGTGATAGTCTTTGCATTGAAGTATC TTGTATTTCACATAAAGGAGTCGATCCTGGAGGATCAAAAGCCTCCAATTGCGGGTCCAATTCTAAATTACCTTGTACACTTCAATAGACTTTTCGATTA TCAAACATCTATTGCTAAGAAACATAGCACTTTTCGTCTGATTACGCCTTCGCATAGTGAAATTTACACGGTCGATCCCCTTAATGTTGAATATATACTG ATAACCAAGTTCTCCAATTACGAAAAGGGTGCCTATAATTATGGGATAATGAGAGATCTATTTGGTGATGGGATTTTCGCAGTAGATGGACATAAATCGC GTCACCAGCGGAAGCTTGCAAGCTATGAATTCTCAACAAGAGTTCTGAGAGATTTAAGTAGTGCTGTTTTTCGGACTAATGCTGCAAAATTAGTTTCAAA GATTACTGTTGCAGCAACAGCTTTGAAGAGCATAGATTTGCAGGATATGCTAATGAAATCGACCTTAGACTCAATATTTAAAGTGGGATTTGGGTTTGAG CTGAATGCTTTGTCTGGCTTGGATGAATTTGGAAGCAGGTTCACCAAAGCCTTTGATGACTCTAATAGTATCATATTTTGGCGATATGTTGATCTAATAT GGGGGCTCAAAAGATTCCTTAATATTGGTTCAGAAGCCTCTCTTAAGCAAAATATCAAAGTCATCAATGATTTCATTTTCGAATTGATTCGGTGCAAGAG AGAGCAGATGAAAACTGGAAAGCTTGAAGGAGGGGAGGAAGATATTCTATCAAGGTTTTTGTTGGAGAGTGAAAAGGATCCAGAGAACATGACTGATCAG TATTTAAGAGATATAACTCTCAATTTCATCATAGCTGGAAAAGACACATCTGCAAATACACTTGCATGGTTCTTTTACATGCTCTGTAAACATCCTCTAG TTCAAGAGAAGGTTGTACAAGAAGTCAGAGAAGCAGTTAGAATTAAGGAAAGTATGTCTGCTGATGAATTTTCGAAATTGATGACTGAAGAAGCCCTGGA CAAGATGCAATACCTTCATGCATCTCTGACAGAAACTCTCAGACTCTATCCAGCTGTTCCTCTGGATGGAAAGAGTGCTGCAGAGGATGAGATTCTTCCT AATGGCTTCAAGGTGAAGAAAGGAGACGGCATAACCTACATGGCTTATGTGATGGGAAGGATGAAAAACATTTGGGGAGACGATGCTGAGGAATTTCATC CAGAACGATGGCTTCATGATGGCATCTTTCTCCTTGATGACCAAGCGGTCACGAGTTCGAATCTCACCATCCCCATTTATTTGATAAAAATTAAGCACAA GGTAATGTGGGCCTGTGCAAGTTTCAAGCTCAAAGGGCTTTCACTTGAGGGGGCTGGCCCTCGCATTTGCCTAGGGAAGGAATTTGCTGACAGGCAAATG AAGATCTTGGCTGCTGTTCTCCTCTACTTCTTTAGGTTCAAACTTGTGGATGCGAGGAAGGAAGCTACATATCGAACAATGTTTACCCTTCACTTAGATA AAGGGCTACATGCATCTATATGCATCTCCAGGCTGTAA
AA sequence Show only first row Show all	>Potri.012G131200.2 pacid=42783178 polypeptide=Potri.012G131202.1.p locus=Potri.012G131200 ID=Potri.012G131200.2.v4.1 annot-version=v4.1 MLFLLVGFYVSPSIILGLIGILIVFVIVFALKYLVFHIKESILEDQKPPIAGPILNYLVHFNRLFDYQTSIAKKHSTFRLITPSHSEIYTVDPLNVEYIL ITKFSNYEKGAYNYGIMRDLFGDGIFAVDGHKSRHQRKLASYEFSTRVLRDLSSAVFRTNAAKLVSKITVAATALKSIDLQDMLMKSTLDSIFKVGFGFE LNALSGLDEFGSRFTKAFDDSNSIIFWRYVDLIWGLKRFLNIGSEASLKQNIKVINDFIFELIRCKREQMKTGKLEGGEEDILSRFLLESEKDPENMTDQ YLRDITLNFIIAGKDTSANTLAWFFYMLCKHPLVQEKVVQEVREAVRIKESMSADEFSKLMTEEALDKMQYLHASLTETLRLYPAVPLDGKSAAEDEILP NGFKVKKGDGITYMAYVMGRMKNIWGDDAEEFHPERWLHDGIFLLDDQAVTSSNLTIPIYLIKIKHKVMWACASFKLKGLSLEGAGPRICLGKEFADRQM KILAAVLLYFFRFKLVDARKEATYRTMFTLHLDKGLHASICISRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44890		CYP704A1	"cytochrome P450, family 704, ...		Potri.012G131200 [exp]	0	1
					Potri.015G025600 [exp]	10.19	0.8714
AT3G19660			unknown protein		Potri.009G085800 [exp]	11.40	0.8846
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.003G220200 [exp]	12.04	0.8576	ERF59
AT5G43066			unknown protein		Potri.014G022000 [exp]	13.67	0.8440
AT3G47110			Leucine-rich repeat protein ki...		Potri.006G273050 [exp]	14.59	0.7957
AT1G01490			Heavy metal transport/detoxifi...		Potri.003G132200 [exp]	15.00	0.8721
					Potri.007G026000 [exp]	19.89	0.8475
AT1G68450		PDE337	PIGMENT DEFECTIVE 337, VQ moti...		Potri.006G199300 [exp]	25.98	0.8291
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.003G121500 [exp]	27.98	0.8264
					Potri.010G219300 [exp]	29.89	0.8563

Compare expression of checked genes

Potri.012G131200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.