Plant FIBer expression Database

Potri.012G131400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28100 504 / 3e-176 ATFUC1 alpha-L-fucosidase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G133500
[exp]
860 / 0 AT2G28100 502 / 3e-175 alpha-L-fucosidase 1 (.1)
Potri.009G006900
[exp]
484 / 4e-168 AT2G28100 704 / 0.0 alpha-L-fucosidase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031681
[exp]
721 / 0 AT2G28100 485 / 2e-168 alpha-L-fucosidase 1 (.1)
Lus10027390
[exp]
698 / 0 AT2G28100 476 / 6e-165 alpha-L-fucosidase 1 (.1)
Lus10021427
[exp]
466 / 2e-161 AT2G28100 671 / 0.0 alpha-L-fucosidase 1 (.1)
Lus10016140
[exp]
456 / 7e-158 AT2G28100 644 / 0.0 alpha-L-fucosidase 1 (.1)
Lus10027391
[exp]
121 / 3e-33 ND 44 / 4e-06
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF01120 Alpha_L_fucos Alpha-L-fucosidase
Representative CDS sequence
>Potri.012G131400.1 pacid=42783719 polypeptide=Potri.012G131400.1.p locus=Potri.012G131400 ID=Potri.012G131400.1.v4.1 annot-version=v4.1
ATGGCCAAGTTGTGGTGCCTTCTGACCATAATCACATTGCTTCAAGTTTCAAAAGTTGTCATCTCAAGACGTGAAGTCACCACACCTCCATTACCAATCC
TACCATTACCATCATCTTCTCAATTGAAATGGCAGGAAAGGGAACTCATAATGTTTCTTCACTTTGGTGTCAATACATTCACTGATTCTGAATGGGGCAC
TGGTCATGAAAACCCTGCTATTTTCAATCCAGTTGGGCTTAATGCTAGCCAGTGGGTCAATGTTGCAGCAGAAGCTGGGTTTTCTCTCATGATACTGACT
GCAAAACATCATGATGGTTTTTGCTTATGGCCTAGTAAGTACACTGACCATTCTGTGGCAAGCAGTCCATGGAAAAACGGGCGTGGAGATGTTGTTCAAG
AACTTGTCATCGCTGCCAGGGCTCACGAAGGGATTGATGTGGGGCTGTATCTTTCTCCATGGGATAGGCATGATAAAAGATACGGTCATGATTTGCAGTA
CAATGAATACTACTTGGCTCAATTGCAAGAACTTCTTAACAAGTATGGGAGTGTTAGGGAGATATGGTTTGATGGTGCAAAAGGTTCAAATGTACCAAAC
ATGTCATACTATTTCTCGGATTGGTTTTCAATGGTGAAAGAGTTGCAAACTTCCATCAACATATTTTCTGATGCCGGCCCGGATGTCAGATGGGTTGGAA
ATGAAATGGGATTTGCAGGAAGTACATGTTGGTCCACCATTAACAGGACCTCACTTTCAATCGGAAATGGAAGCATCGTCGACTATCTCAACACTGGTGA
TTCGAAAGGGACAGATTGGCTGCCGGCAGAATGTGATGTTTCGATCCGAAAAGGATGGTTTTGGCATAAATCAGAATCACCAAAGAGGTTAAGCGAGTTA
CTTGACATCTATTACAAGTCGGTAGGACGAAATTGTGTGCTATTATTCAATGTGCCTCCCAACACAACCGGCCTTATATCTGAGAATGATGTCCAGAGAC
TAAAAGAATTCCGAGGTGCAATCGACACCATATTTTCTACAAATTTGGCTGAGAGTTGCTTTGTAAGAGCTAGCAGCCAAAGAGGGGGGAAGGATGGCGA
TTTCGGACCCGAAAACGTGCTAGATGGCGACCATTTGTGGACTTATTGGGCACCAAAAGACGAAGAGTCGGAAGATAACTGGATCGAGTTCAAATGTATT
GATAAATTGAGATTTAATGTTATTAGGATTCAAGAAGCAATTGGTCTTGGTCAAAGGATCAAACAACATGAAGTTTATGTAGATGGTAGGAAGGTTGCTA
AAGGGACTACAGTGGGGCACAAGAGGCTACATAGACTTGAAAAGGGAGTCGTCAAGGGTCATATTGTGAGCATTAAGATTCTCAAATCAAGAGCAGTGCC
ATTGATGTCTTCCATTGGTTTGCATTATGACCCTTTTTGGCACCCAAATGAGACATGA
AA sequence
>Potri.012G131400.1 pacid=42783719 polypeptide=Potri.012G131400.1.p locus=Potri.012G131400 ID=Potri.012G131400.1.v4.1 annot-version=v4.1
MAKLWCLLTIITLLQVSKVVISRREVTTPPLPILPLPSSSQLKWQERELIMFLHFGVNTFTDSEWGTGHENPAIFNPVGLNASQWVNVAAEAGFSLMILT
AKHHDGFCLWPSKYTDHSVASSPWKNGRGDVVQELVIAARAHEGIDVGLYLSPWDRHDKRYGHDLQYNEYYLAQLQELLNKYGSVREIWFDGAKGSNVPN
MSYYFSDWFSMVKELQTSINIFSDAGPDVRWVGNEMGFAGSTCWSTINRTSLSIGNGSIVDYLNTGDSKGTDWLPAECDVSIRKGWFWHKSESPKRLSEL
LDIYYKSVGRNCVLLFNVPPNTTGLISENDVQRLKEFRGAIDTIFSTNLAESCFVRASSQRGGKDGDFGPENVLDGDHLWTYWAPKDEESEDNWIEFKCI
DKLRFNVIRIQEAIGLGQRIKQHEVYVDGRKVAKGTTVGHKRLHRLEKGVVKGHIVSIKILKSRAVPLMSSIGLHYDPFWHPNET

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G28100 ATFUC1 alpha-L-fucosidase 1 (.1) Potri.012G131400
[exp]
0 1
AT3G18490 Eukaryotic aspartyl protease f... Potri.015G051800
[exp]
2.23 0.8498
AT3G16070 unknown protein Potri.001G182500
[exp]
13.96 0.8292
AT5G15780 Pollen Ole e 1 allergen and ex... Potri.004G114300
[exp]
17.40 0.8385
Potri.016G139350
[exp]
25.45 0.8273
AT4G32890 GATA GATA9 GATA transcription factor 9 (.... Potri.019G033000
[exp]
30.59 0.7856
AT1G54200 unknown protein Potri.018G049900
[exp]
33.94 0.7363
AT1G29730 Leucine-rich repeat transmembr... Potri.016G012300
[exp]
34.11 0.8331
AT1G29730 Leucine-rich repeat transmembr... Potri.010G155000
[exp]
37.84 0.8244
AT5G48170 SNE, SLY2 SNEEZY, SLEEPY2, F-box family ... Potri.014G165700
[exp]
38.53 0.7807
Potri.002G138100
[exp]
44.19 0.8041

Potri.012G131400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.