Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25390 486 / 4e-164 Protein kinase superfamily protein (.1.2) AT5G51770 461 / 2e-154 Protein kinase superfamily protein (.1) AT2G45590 459 / 3e-153 Protein kinase superfamily protein (.1) AT1G80870 167 / 2e-43 Protein kinase superfamily protein (.1) AT3G58690 146 / 5e-38 Protein kinase superfamily protein (.1) AT5G15730 141 / 4e-36 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT3G18810 140 / 2e-34 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT4G32300 140 / 2e-34 SD2-5 S-domain-2 5 (.1) AT3G20530 135 / 2e-34 Protein kinase superfamily protein (.1) AT1G79620 140 / 3e-34 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134100 [exp] 999 / 0 AT4G25390 536 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G150800 [exp] 547 / 0 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1) Potri.014G072900 [exp] 536 / 0 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.003G183100 [exp] 167 / 1e-43 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1) Potri.001G043700 [exp] 161 / 2e-41 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 140 / 1e-35 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 139 / 1e-35 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.018G135300 [exp] 137 / 4e-35 AT2G17220 358 / 1e-121 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G081300 [exp] 140 / 8e-35 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027393 [exp] 652 / 0 AT4G25390 555 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041395 [exp] 491 / 1e-165 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1) Lus10031679 [exp] 319 / 4e-104 AT4G25390 280 / 1e-91 Protein kinase superfamily protein (.1.2) Lus10031678 [exp] 317 / 5e-103 AT2G45590 263 / 6e-83 Protein kinase superfamily protein (.1) Lus10036533 [exp] 296 / 3e-92 AT2G45590 416 / 2e-138 Protein kinase superfamily protein (.1) Lus10036534 [exp] 138 / 2e-38 AT2G45590 161 / 1e-47 Protein kinase superfamily protein (.1) Lus10026069 [exp] 147 / 9e-37 AT1G80870 646 / 0.0 Protein kinase superfamily protein (.1) Lus10026335 [exp] 142 / 4e-36 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10000249 [exp] 145 / 8e-36 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10008540 [exp] 140 / 8e-36 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.012G131900.3 pacid=42782895 polypeptide=Potri.012G131900.3.p locus=Potri.012G131900 ID=Potri.012G131900.3.v4.1 annot-version=v4.1 ATGCCATCTCGCCCAGCCCCTCCTTTCCTTCCACCCCAACCTTCTCCTCTCCCCTACCACCAACGCTCTTCCAGCCTCATCCCTCCCCTAGCCGCCGCCT CCACTGCTGCCTTCTCTTTCCTCCTCCTCTTCGTCATCTGCTTCCGCAAACTCACTCGTAAGCGCACTGTCCCCACTGACTTCTCCAAACCCCCTCACCG TTTCTCCTACACCACTCTCCGCCGCGCCACCAACAAGTTCTCCCCTTCTCTTCGCTTAGGCCAAGGCGGGTTTGGCTCAGTTTATCATGGGACTCTTCCT AATGAGCTCAACGTTGCTGTTAAAGTTATGGACTCGGGCTCTCTCCAAGGGGAAAGAGAGTTCCAAAATGAGTTGCTTTTTGCTTCAAAGCTTGATTCTT GTTATATTGTTACAGCCCTTGGTTTTTCCTATGATAGGAAGCATCGTAGTTTGTTGATAGTGTATGAGCTTATGCAAAATGGGAACTTGCAGGATGCATT GCTTCATAGAAAATGTGTGGAGTTGGTTGATTGGAAGAAAAGATTTAGCATTGCCGTTGATATTGCTAAAGGGATCGAGTATCTTCATAGTTTGGATCCT CCTGTTATTCATGGAGATATTAAGCCTAGTAATATTTTGCTTGATCAGTGTTTTAATGCGAAAGTTGCTGATTTTGGATTAGCTTGGTTAAAAATTGATA ATAGCAATCAGAATGACCAGAATCAGTGCAATCAGGGTCAGTGTGAGGTTAAGGTGGAAGAGAGTGATAAAATAAATGGTGGGGTGGAGTTGAAAAAGGT TGAATTGGAGAGCAATAACGGGGGTGAGGATTATGGATCTGTGGTGGAGGAGACTGACAGTGTGACTACTGGGTTTGATGAGTTTAATTTGGTGGTGGAT CAGTTGCCGGTTTGTATGACATCGCCCGAAACTTTGGAGGCTGTGAGTGCTTCTCCAGAGACTGGTGGTGTGGGGGTTTTGCTCGAGGGGAATTTGGATG TGGGTAGTATAGAGGGTGGGAAAGAATTGGTTAATGGGGAGAAAAATAACGGGGGAGGGATACAGAGCGAGTCTCGAAAGGATTGGTGGTTGAAGCAAGA AAAAGGTGGCACTACGGCGGAGAATGGGGGAGTGAAGGATTATGTGATGGAATGGCTTGGAACTGAGATAAATAAGGGGAGACCGAAAAGTGATTGGATT GGAGCTTCATCGTCATCGAATAGTCAATCTGTTGGGAAGATAGTTAAGAAGAAGAATCGGAAGAGATTGGATTGGTGGGTTTCGTTAGATGATGATAAGG GTGAGAAGGTTTTGAAGAAGGAGAAGAGAAGGCCAGCAAGGGAATGGTGGAAGGAGGAGTATTGCGAAGAGTTGGAGAAAAAAAATAAGAAAAAGAAGAA GAGAGAAATGGGGATGACTAGTGATGATAATAATGGTGGAGAAGATTGGTGGCCAAGAGATGAGGAATTGTATGCTGAGAGAAAGAAGAAGAGAAGTAAG AGTAGAGGCAGCAGAGGCAGCATAGGCAGTATTGAATGGTTTAGTGGTGAGCTATTTAGAGGTAACCAGAATAGCCATGATTCTTTGAGTGGAGAGATAC CGGAGAGTGGTGGAATCAGTAGTACACCAAGTATGAGAGGAACCGTTTGTTATGCCGCCCCTGAGTATGGTGGTGGGGGGAATTTATCAGAGAAATCTGA TGTGTATAGCTTTGGGGTGTTATTGTTAGTTCTTATTGCTGGGAGGCGTCCACTTCAGGTTACTACCTTACCAATGTCTGAGTTTCAGCGTGCTAACCTA ATGCATTGGGCTCGTAATCTTGCCCGTTCTGGCAAACTTCTTGATTTGGTTGATAAGTCTGTACAGTCTTTGGATCGGGAACAAGCTACATTATGCATCA CTATTGCTCTTCTTTGTTTACAAAAGTCACCTGCTCATCGTCCTTCAATGACGGAGGTTGTGGGGATGCTCACCGGAGAGTCACATGTGCCTCAATTACC ATCTGAATTTTCTCCCTCACCTCCCACACGGTTCCCTTTCAAGTCCAAGTCACATCAGAAGGTTCGGTAA
AA sequence Show only first row Show all	>Potri.012G131900.3 pacid=42782895 polypeptide=Potri.012G131900.3.p locus=Potri.012G131900 ID=Potri.012G131900.3.v4.1 annot-version=v4.1 MPSRPAPPFLPPQPSPLPYHQRSSSLIPPLAAASTAAFSFLLLFVICFRKLTRKRTVPTDFSKPPHRFSYTTLRRATNKFSPSLRLGQGGFGSVYHGTLP NELNVAVKVMDSGSLQGEREFQNELLFASKLDSCYIVTALGFSYDRKHRSLLIVYELMQNGNLQDALLHRKCVELVDWKKRFSIAVDIAKGIEYLHSLDP PVIHGDIKPSNILLDQCFNAKVADFGLAWLKIDNSNQNDQNQCNQGQCEVKVEESDKINGGVELKKVELESNNGGEDYGSVVEETDSVTTGFDEFNLVVD QLPVCMTSPETLEAVSASPETGGVGVLLEGNLDVGSIEGGKELVNGEKNNGGGIQSESRKDWWLKQEKGGTTAENGGVKDYVMEWLGTEINKGRPKSDWI GASSSSNSQSVGKIVKKKNRKRLDWWVSLDDDKGEKVLKKEKRRPAREWWKEEYCEELEKKNKKKKKREMGMTSDDNNGGEDWWPRDEELYAERKKKRSK SRGSRGSIGSIEWFSGELFRGNQNSHDSLSGEIPESGGISSTPSMRGTVCYAAPEYGGGGNLSEKSDVYSFGVLLLVLIAGRRPLQVTTLPMSEFQRANL MHWARNLARSGKLLDLVDKSVQSLDREQATLCITIALLCLQKSPAHRPSMTEVVGMLTGESHVPQLPSEFSPSPPTRFPFKSKSHQKVR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25390			Protein kinase superfamily pro...		Potri.012G131900 [exp]	0	1
AT1G73150		GTE3	global transcription factor gr...		Potri.001G285700 [exp]	6.92	0.6393	GTE906
AT1G20180			Protein of unknown function (D...		Potri.005G243800 [exp]	10.19	0.6129
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.006G258300 [exp]	10.81	0.6955
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.014G164800 [exp]	11.83	0.5950
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.006G154000 [exp]	15.90	0.5913
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Potri.001G148000 [exp]	17.66	0.6130	CXIP4.1
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.009G155500 [exp]	21.26	0.6693
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.005G230500 [exp]	23.95	0.6118
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Potri.019G018300 [exp]	28.07	0.6639
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.006G006700 [exp]	37.30	0.5473

Compare expression of checked genes

Potri.012G131900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.