Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51790 154 / 7e-47 bHLH bHLH120 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25410 154 / 1e-46 bHLH bHLH126 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51780 152 / 3e-46 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25400 146 / 4e-44 bHLH bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12540 126 / 3e-35 bHLH bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G62975 122 / 1e-33 bHLH bHLH125 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G04150 45 / 1e-05 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G20970 42 / 0.0001 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 42 / 0.0002 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 42 / 0.0002 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134300 [exp] 346 / 8e-122 AT5G51780 143 / 1e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G113400 [exp] 165 / 1e-50 AT4G25410 124 / 6e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132100 [exp] 157 / 2e-47 AT4G25410 120 / 3e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134400 [exp] 142 / 2e-41 AT5G51790 107 / 2e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G053400 [exp] 68 / 2e-13 AT4G20970 160 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G044400 [exp] 67 / 2e-13 AT4G20970 150 / 3e-46 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099500 [exp] 54 / 8e-09 AT4G20970 83 / 2e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G034700 [exp] 52 / 3e-08 AT4G20970 104 / 5e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G099700 [exp] 50 / 4e-07 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027394 [exp] 169 / 9e-52 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 167 / 3e-51 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027395 [exp] 123 / 4e-34 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007049 [exp] 123 / 8e-34 AT1G62975 138 / 3e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031676 [exp] 118 / 2e-32 AT5G51780 119 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031675 [exp] 96 / 8e-24 AT4G25400 94 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027396 [exp] 91 / 9e-22 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006707 [exp] 77 / 1e-17 AT1G62975 89 / 8e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011172 [exp] 57 / 1e-09 AT4G20970 144 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030243 [exp] 48 / 3e-06 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G132000.1 pacid=42783534 polypeptide=Potri.012G132000.1.p locus=Potri.012G132000 ID=Potri.012G132000.1.v4.1 annot-version=v4.1 ATGTTCCCTTTACACCAAGGTGATGAGCTGTGCTTCAATATTTCCTCCGATCCCCACCAACAACACAACATCCCACAAGATCTGATTCTTGCTCGATATG CTGCACTCCAAGGAAGTGATACAACCAACAAAATGGAAAATGATCGGCGGCGATTTTTAATTTCCATGGACAGTAATCATGAGGTTGCTAGAGATCATAG TAAAAATAATAATAAGAAGATGATGCATAGAAATATTGAAAGACAAAGAAGGCAAGAAATGACAACCCTTTATGCATCCCTTCGAGCTCTACTCCCTCTT GAGTTTATCAAGGGAAAGCGTTCAATATCGGATCACATGAACGAGTCTGTGAATTATATAAAGTATCTCCAAAAGAAGATCAAAGAACTTAGTGCCAAGA GAGATGGGTTAAAGAAATCCCCCAATTTAAGCTTTGATTCCCCAAGTGGAAGTTCTAACAAGTACTCTCCAATTAGTCCAGTAACCCTCCAGCCATATCC AGGTGGTATTGAGGTTGTGTTTGATAGTGATTTTAGGGGGCAAGATTCCCCCCTATCAAGAGTGTTGCAAGTGTTGCTTGAAGAAGGAATCTCTGTTGTT AACTGTGTTTCCACCAAAGTAAATGAAAGATTATTTCATACCGTCCAAACTGAGGTCAATGATCCTGCATGCTTAAATCTATCCGAGCTGCGGCAGAAAT TAACCCTACGAGTTGTTTCTTGA
AA sequence Show only first row Show all	>Potri.012G132000.1 pacid=42783534 polypeptide=Potri.012G132000.1.p locus=Potri.012G132000 ID=Potri.012G132000.1.v4.1 annot-version=v4.1 MFPLHQGDELCFNISSDPHQQHNIPQDLILARYAALQGSDTTNKMENDRRRFLISMDSNHEVARDHSKNNNKKMMHRNIERQRRQEMTTLYASLRALLPL EFIKGKRSISDHMNESVNYIKYLQKKIKELSAKRDGLKKSPNLSFDSPSGSSNKYSPISPVTLQPYPGGIEVVFDSDFRGQDSPLSRVLQVLLEEGISVV NCVSTKVNERLFHTVQTEVNDPACLNLSELRQKLTLRVVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.012G132000 [exp]	0	1
AT4G25410	bHLH	bHLH126	basic helix-loop-helix (bHLH) ...		Potri.012G132100 [exp]	1.73	0.9695
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.006G277000 [exp]	2.82	0.9715
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.002G109601 [exp]	3.46	0.9675
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G007900 [exp]	3.87	0.9680
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.016G099200 [exp]	4.58	0.9672
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Potri.015G134300 [exp]	4.79	0.9445
AT3G45070			P-loop containing nucleoside t...		Potri.010G138501 [exp]	5.19	0.9617
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.013G044500 [exp]	5.29	0.9693
AT1G10480	C2H2ZnF	ZFP5	zinc finger protein 5 (.1)		Potri.010G036400 [exp]	7.21	0.9541	Pt-ZFP5.2
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.013G047950 [exp]	7.74	0.9530

Compare expression of checked genes

Potri.012G132000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.