Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25410 120 / 4e-33 bHLH bHLH126 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51790 117 / 2e-32 bHLH bHLH120 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51780 108 / 2e-29 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25400 104 / 7e-28 bHLH bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G62975 97 / 5e-24 bHLH bHLH125 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12540 88 / 1e-20 bHLH bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56970 52 / 1e-07 bHLH ORG2, bHLH038 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G20970 47 / 2e-06 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G04150 42 / 0.0001 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41240 42 / 0.0002 bHLH bHLH100 basic helix-loop-helix protein 100 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134400 [exp] 338 / 2e-118 AT5G51790 107 / 2e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134300 [exp] 164 / 4e-50 AT5G51780 143 / 1e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132000 [exp] 157 / 2e-47 AT5G51790 154 / 6e-47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G113400 [exp] 118 / 2e-32 AT4G25410 124 / 6e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G053400 [exp] 49 / 1e-06 AT4G20970 160 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G044400 [exp] 48 / 1e-06 AT4G20970 150 / 3e-46 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G079100 [exp] 47 / 2e-06 AT4G20970 105 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099500 [exp] 44 / 3e-05 AT4G20970 83 / 2e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G068500 [exp] 44 / 6e-05 AT2G31220 253 / 7e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027396 [exp] 127 / 2e-35 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031675 [exp] 119 / 2e-32 AT4G25400 94 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 111 / 1e-29 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 109 / 1e-28 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027395 [exp] 103 / 2e-26 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007049 [exp] 101 / 3e-25 AT1G62975 138 / 3e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031676 [exp] 96 / 7e-24 AT5G51780 119 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006707 [exp] 59 / 2e-10 AT1G62975 89 / 8e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011172 [exp] 56 / 1e-09 AT4G20970 144 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G132100.2 pacid=42782988 polypeptide=Potri.012G132100.2.p locus=Potri.012G132100 ID=Potri.012G132100.2.v4.1 annot-version=v4.1 ATGTTTCCATTCCAACAAAATAGTGATGAATTTTGGCCCCAAATCTTCTCTAATCCCTACCAAGAAGATATTGGTAAAGATTTTCAGGATCTCATCTATG GCCAAGATTCACTTCATGGAATTAGTAACCAAACCATCTCAGTGGACGAAATTCAGAAACATAAAATATTAGCAACTTCAAAAGCTAATGATCATAGTGG AAAAATTATTCGTGATGAGAAGAAGATTGCTCGGAAGGAAATCGAACGGCAAAGGAGGCAACATATATCCACTCTTCATGCTTCACTTCGGAACCTACTC CCTCTTGAATCAATCAAGGGAAAGCGCTCAATCTCTGATCACATGAATGAGGCTGCGAAGTATATAAAGCATCTAAGTAGTAACATCCGAGAATTAAGTG CCAAGAGAGATAAATTCAAGAAACTCTCCAACTCAAGTACTTTTGAACAAGGGACTGAAATTTCAGGCCATAATTTGCTGGACTTTGTTAAGGTTCGCCC TTATTTGGGTGGAGTGGAGATTGTTGTGAGTGGAGGCTGTGGAGAGGAAGGGTTTCTTCTATCAAGAGTGCTAGAAGCATTGCTTGAAGAGGGATTTGAT GCTGTTAGCTATGTTTCTACACAAAAAGATGAAAGGCATTATACCACTATCCAGTGTCAGGCTACCAATCGGAATTGCATTGATTCAGATGGGCTGCAAA GAAAACTAAATGGTGTGATCTCATTGTCATGA
AA sequence Show only first row Show all	>Potri.012G132100.2 pacid=42782988 polypeptide=Potri.012G132100.2.p locus=Potri.012G132100 ID=Potri.012G132100.2.v4.1 annot-version=v4.1 MFPFQQNSDEFWPQIFSNPYQEDIGKDFQDLIYGQDSLHGISNQTISVDEIQKHKILATSKANDHSGKIIRDEKKIARKEIERQRRQHISTLHASLRNLL PLESIKGKRSISDHMNEAAKYIKHLSSNIRELSAKRDKFKKLSNSSTFEQGTEISGHNLLDFVKVRPYLGGVEIVVSGGCGEEGFLLSRVLEALLEEGFD AVSYVSTQKDERHYTTIQCQATNRNCIDSDGLQRKLNGVISLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25410	bHLH	bHLH126	basic helix-loop-helix (bHLH) ...		Potri.012G132100 [exp]	0	1
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.012G132000 [exp]	1.73	0.9695
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G028000 [exp]	3.00	0.9430
					Potri.012G120952 [exp]	8.48	0.9315
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Potri.004G150400 [exp]	9.38	0.9119	Pt-CLB6.1
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.006G277000 [exp]	9.48	0.9422
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.001G288600 [exp]	9.48	0.9208	Pt-ATPRB1.4
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G007900 [exp]	9.53	0.9411
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.002G109601 [exp]	9.79	0.9348
AT3G52490			Double Clp-N motif-containing ...		Potri.016G071800 [exp]	10.29	0.8813
AT3G52490			Double Clp-N motif-containing ...		Potri.006G204500 [exp]	10.95	0.9123

Compare expression of checked genes

Potri.012G132100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.